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    MNX1-AS2 MNX1 antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 105375606, updated on 10-Dec-2024

    Summary

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    Official Symbol
    MNX1-AS2provided by HGNC
    Official Full Name
    MNX1 antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:40278
    See related
    Ensembl:ENSG00000235029 AllianceGenome:HGNC:40278
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in colon (RPKM 4.7), small intestine (RPKM 4.0) and 7 other tissues See more
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    Genomic context

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    See MNX1-AS2 in Genome Data Viewer
    Location:
    7q36.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (157006307..157007120)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (158194042..158194855)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (156799001..156799814)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375605 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:156741558-156742086 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18854 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18855 Neighboring gene nucleolar protein with MIF4G domain 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:156761024-156761215 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18856 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:156793008-156793178 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:156795552-156796258 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:156797975-156798627 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18857 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18859 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26921 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26922 Neighboring gene MNX1 antisense RNA 1 (head to head) Neighboring gene motor neuron and pancreas homeobox 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:156833123-156833822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156838101-156838601 Neighboring gene MPRA-validated peak6868 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156847242-156847742 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156847743-156848243 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156870553-156871110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:156871111-156871667 Neighboring gene adenosylmethionine decarboxylase 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. Long W, et al. Clin Chim Acta, 2016 Dec 1. PMID 27816668

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_147077.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006357
      Related
      ENST00000429228.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      157006307..157007120
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      158194042..158194855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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