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    PPM1K-DT PPM1K divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105369192, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PPM1K-DTprovided by HGNC
    Official Full Name
    PPM1K divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:54093
    See related
    Ensembl:ENSG00000246375 AllianceGenome:HGNC:54093
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See PPM1K-DT in Genome Data Viewer
    Location:
    4q22.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (88284930..88341657)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (91615908..91672611)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (89206082..89262809)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily G member 2 (JR blood group) Neighboring gene RNA, U6 small nuclear 1298, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:89165283-89165815 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:89188029-89188528 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1K Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21710 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:89205598-89206121 Neighboring gene RNA, U6 small nuclear 112, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:89217507-89218473 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21712 Neighboring gene uncharacterized LOC124900731 Neighboring gene uncharacterized LOC105377326

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134236.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC107067, BC027846, DA132869
      Related
      ENST00000500009.3

    2. NR_134237.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC107067, BC027846, DA132869
      Related
      ENST00000661338.2

    3. NR_134238.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an internal exon and has a distinct 3' region, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AA706035, DA132869, DA259534
      Related
      ENST00000685747.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      88284930..88341657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      91615908..91672611
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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