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    LINC01413 long intergenic non-protein coding RNA 1413 [ Homo sapiens (human) ]

    Gene ID: 101928611, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01413provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1413provided by HGNC
    Primary source
    HGNC:HGNC:50705
    See related
    Ensembl:ENSG00000260172 AllianceGenome:HGNC:50705
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.2) See more
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    Genomic context

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    See LINC01413 in Genome Data Viewer
    Location:
    15q21.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (57319138..57325039)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (55121865..55127855)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (57611336..57617237)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene transcription factor 12 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9460 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:57598867-57599070 Neighboring gene small nucleolar RNA, C/D box 13D Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:57615704-57616211 Neighboring gene long intergenic non-protein coding RNA 926 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:57647689-57648410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:57663634-57664134 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:57679772-57680356 Neighboring gene RNA, U6 small nuclear 844, pseudogene Neighboring gene cingulin like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a large population of mRNAs from human testis. Pawlak A, et al. Genomics, 1995 Mar 1. PMID 7782076
    2. A transcript finishing initiative for closing gaps in the human transcriptome. Sogayar MC, et al. Genome Res, 2004 Jul. PMID 15197164, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120337.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016525
      Related
      ENST00000564843.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      57319138..57325039
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      55121865..55127855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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