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    LINC00348 long intergenic non-protein coding RNA 348 [ Homo sapiens (human) ]

    Gene ID: 100885781, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00348provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 348provided by HGNC
    Primary source
    HGNC:HGNC:42658
    See related
    Ensembl:ENSG00000226846 AllianceGenome:HGNC:42658
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.1), pancreas (RPKM 0.2) and 3 other tissues See more
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    Genomic context

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    See LINC00348 in Genome Data Viewer
    Location:
    13q21.33
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (71015141..71168417)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (70239850..70393639)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (71589273..71742549)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370255 Neighboring gene VISTA enhancer hs126 Neighboring gene VISTA enhancer hs540 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:71415058-71415920 Neighboring gene VISTA enhancer hs882 Neighboring gene MTCL1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7809 Neighboring gene NANOG hESC enhancer GRCh37_chr13:71604884-71605484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:71629802-71630358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5393 Neighboring gene VISTA enhancer hs129 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:71853958-71854155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7810 Neighboring gene Rab9 effector protein with kelch motifs pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:71964457-71964957 Neighboring gene dachshund family transcription factor 1 Neighboring gene Sharpr-MPRA regulatory region 6884 Neighboring gene H3 histone pseudogene 36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047699.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI480312, AL139001, AL139803
      Related
      ENST00000428761.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      71015141..71168417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      70239850..70393639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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