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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042060.1 RefSeqGene
- Range
-
5001..32260
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_999
mRNA and Protein(s)
-
NM_001304815.2 → NP_001291744.1 protein capicua homolog isoform CIC-L
See identical proteins and their annotated locations for NP_001291744.1
Status: REVIEWED
- Source sequence(s)
-
AC006486
- Consensus CDS
-
CCDS92632.1
- UniProtKB/Swiss-Prot
- A0A7P0T9K5, Q7LGI1, Q96RK0, Q9UEG5, Q9Y6T1
- Conserved Domains (5) summary
-
- PHA03247
Location:1765 → 2185
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK14086
Location:871 → 1046
- dnaA; chromosomal replication initiator protein DnaA
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam16090
Location:252 → 349
- DUF4819; Domain of unknown function (DUF4819)
-
NM_001379480.1 → NP_001366409.1 protein capicua homolog isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC006486
- Conserved Domains (5) summary
-
- PHA03247
Location:1765 → 2184
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK14086
Location:871 → 1046
- dnaA; chromosomal replication initiator protein DnaA
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam16090
Location:252 → 349
- DUF4819; Domain of unknown function (DUF4819)
-
NM_001379482.1 → NP_001366411.1 protein capicua homolog isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC006486
- Conserved Domains (5) summary
-
- PHA03247
Location:1765 → 2185
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK14086
Location:871 → 1046
- dnaA; chromosomal replication initiator protein DnaA
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam16090
Location:252 → 349
- DUF4819; Domain of unknown function (DUF4819)
-
NM_001379484.1 → NP_001366413.1 protein capicua homolog isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC006486
- UniProtKB/TrEMBL
-
A7XAK3
- Conserved Domains (3) summary
-
- PHA03247
Location:856 → 1276
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:171 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
NM_001379485.1 → NP_001366414.1 protein capicua homolog isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC006486
- UniProtKB/TrEMBL
-
A7XAK3
- Conserved Domains (3) summary
-
- PHA03247
Location:856 → 1276
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:171 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
NM_001386298.1 → NP_001373227.1 protein capicua homolog isoform CIC-L
Status: REVIEWED
- Source sequence(s)
-
AC006486
- Consensus CDS
-
CCDS92632.1
- UniProtKB/Swiss-Prot
- A0A7P0T9K5, Q7LGI1, Q96RK0, Q9UEG5, Q9Y6T1
- Related
- ENSP00000505728.1, ENST00000681038.1
- Conserved Domains (5) summary
-
- PHA03247
Location:1765 → 2185
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK14086
Location:871 → 1046
- dnaA; chromosomal replication initiator protein DnaA
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam16090
Location:252 → 349
- DUF4819; Domain of unknown function (DUF4819)
-
NM_015125.5 → NP_055940.3 protein capicua homolog isoform CIC-S
See identical proteins and their annotated locations for NP_055940.3
Status: REVIEWED
- Source sequence(s)
-
AC006486
- Consensus CDS
-
CCDS12601.1
- UniProtKB/TrEMBL
-
A7XAK3
- Related
- ENSP00000458663.2, ENST00000575354.6
- Conserved Domains (2) summary
-
- COG5648
Location:171 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000019.10 Reference GRCh38.p14 Primary Assembly
- Range
-
42268530..42295796
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047438497.1 → XP_047294453.1 protein capicua homolog isoform X6
-
XM_047438493.1 → XP_047294449.1 protein capicua homolog isoform X3
-
XM_047438498.1 → XP_047294454.1 protein capicua homolog isoform X9
-
XM_047438495.1 → XP_047294451.1 protein capicua homolog isoform X5
-
XM_047438503.1 → XP_047294459.1 protein capicua homolog isoform X13
-
XM_011526665.3 → XP_011524967.1 protein capicua homolog isoform X6
- Conserved Domains (3) summary
-
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam16090
Location:252 → 349
- DUF4819; Domain of unknown function (DUF4819)
-
XM_011526666.3 → XP_011524968.1 protein capicua homolog isoform X9
- Conserved Domains (3) summary
-
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam16090
Location:252 → 349
- DUF4819; Domain of unknown function (DUF4819)
-
XM_024451433.2 → XP_024307201.1 protein capicua homolog isoform X8
- Conserved Domains (5) summary
-
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam16090
Location:252 → 346
- DUF4819; Domain of unknown function (DUF4819)
- cl26464
Location:1765 → 2184
- Atrophin-1; Atrophin-1 family
- cl28271
Location:871 → 1046
- dnaA; chromosomal replication initiation protein; Provisional
-
XM_024451432.2 → XP_024307200.1 protein capicua homolog isoform X5
- Conserved Domains (5) summary
-
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam16090
Location:252 → 346
- DUF4819; Domain of unknown function (DUF4819)
- cl26464
Location:1765 → 2184
- Atrophin-1; Atrophin-1 family
- cl28271
Location:871 → 1046
- dnaA; chromosomal replication initiation protein; Provisional
-
XM_047438502.1 → XP_047294458.1 protein capicua homolog isoform X13
-
XM_011526662.3 → XP_011524964.1 protein capicua homolog isoform X2
- Conserved Domains (3) summary
-
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam16090
Location:252 → 349
- DUF4819; Domain of unknown function (DUF4819)
-
XM_047438500.1 → XP_047294456.1 protein capicua homolog isoform X11
-
XM_047438496.1 → XP_047294452.1 protein capicua homolog isoform X7
-
XM_047438504.1 → XP_047294460.1 protein capicua homolog isoform X14
-
XM_011526664.3 → XP_011524966.1 protein capicua homolog isoform X4
- Conserved Domains (3) summary
-
- COG5648
Location:1080 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam16090
Location:252 → 349
- DUF4819; Domain of unknown function (DUF4819)
-
XM_047438501.1 → XP_047294457.1 protein capicua homolog isoform X12
-
XM_047438499.1 → XP_047294455.1 protein capicua homolog isoform X10
- UniProtKB/TrEMBL
-
I3L2J0
- Related
- ENSP00000459719.1, ENST00000572681.6
-
XM_011526667.3 → XP_011524969.1 protein capicua homolog isoform X15
- Conserved Domains (4) summary
-
- PHA03247
Location:1516 → 1973
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:1065 → 1224
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK14086
Location:871 → 1046
- dnaA; chromosomal replication initiator protein DnaA
- cd01388
Location:1108 → 1179
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_047438505.1 → XP_047294461.1 protein capicua homolog isoform X16
-
XM_047438506.1 → XP_047294462.1 protein capicua homolog isoform X17
-
XM_047438507.1 → XP_047294463.1 protein capicua homolog isoform X18
-
XM_047438492.1 → XP_047294448.1 protein capicua homolog isoform X1
- UniProtKB/Swiss-Prot
- A0A7P0T9K5, Q7LGI1, Q96RK0, Q9UEG5, Q9Y6T1
-
XM_047438511.1 → XP_047294467.1 protein capicua homolog isoform X25
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_047438512.1 → XP_047294468.1 protein capicua homolog isoform X26
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_047438509.1 → XP_047294465.1 protein capicua homolog isoform X20
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_047438508.1 → XP_047294464.1 protein capicua homolog isoform X19
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_005258674.3 → XP_005258731.1 protein capicua homolog isoform X22
- UniProtKB/TrEMBL
-
A7XAK3
- Conserved Domains (2) summary
-
- COG5648
Location:171 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
-
XM_047438510.1 → XP_047294466.1 protein capicua homolog isoform X23
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_005258673.3 → XP_005258730.1 protein capicua homolog isoform X21
- UniProtKB/TrEMBL
- A0A0A0MQR4, A7XAK3
- Related
- ENSP00000160740.3, ENST00000160740.7
- Conserved Domains (2) summary
-
- COG5648
Location:171 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
-
XM_005258675.3 → XP_005258732.1 protein capicua homolog isoform X24
- UniProtKB/TrEMBL
-
A7XAK3
- Conserved Domains (2) summary
-
- COG5648
Location:171 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
-
XM_047438513.1 → XP_047294469.1 protein capicua homolog isoform X27
- UniProtKB/TrEMBL
-
A7XAK3
- Related
-
ENST00000684265.1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060943.1 Alternate T2T-CHM13v2.0
- Range
-
45087903..45115169
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054320321.1 → XP_054176296.1 protein capicua homolog isoform X6
-
XM_054320315.1 → XP_054176290.1 protein capicua homolog isoform X3
-
XM_054320324.1 → XP_054176299.1 protein capicua homolog isoform X9
-
XM_054320318.1 → XP_054176293.1 protein capicua homolog isoform X5
-
XM_054320329.1 → XP_054176304.1 protein capicua homolog isoform X13
-
XM_054320319.1 → XP_054176294.1 protein capicua homolog isoform X6
-
XM_054320323.1 → XP_054176298.1 protein capicua homolog isoform X9
-
XM_054320322.1 → XP_054176297.1 protein capicua homolog isoform X8
-
XM_054320317.1 → XP_054176292.1 protein capicua homolog isoform X5
-
XM_054320328.1 → XP_054176303.1 protein capicua homolog isoform X13
-
XM_054320314.1 → XP_054176289.1 protein capicua homolog isoform X2
-
XM_054320326.1 → XP_054176301.1 protein capicua homolog isoform X11
-
XM_054320320.1 → XP_054176295.1 protein capicua homolog isoform X7
-
XM_054320330.1 → XP_054176305.1 protein capicua homolog isoform X14
-
XM_054320316.1 → XP_054176291.1 protein capicua homolog isoform X4
-
XM_054320327.1 → XP_054176302.1 protein capicua homolog isoform X12
-
XM_054320325.1 → XP_054176300.1 protein capicua homolog isoform X10
- UniProtKB/TrEMBL
-
I3L2J0
-
XM_054320331.1 → XP_054176306.1 protein capicua homolog isoform X15
-
XM_054320332.1 → XP_054176307.1 protein capicua homolog isoform X16
-
XM_054320333.1 → XP_054176308.1 protein capicua homolog isoform X17
-
XM_054320334.1 → XP_054176309.1 protein capicua homolog isoform X18
-
XM_054320313.1 → XP_054176288.1 protein capicua homolog isoform X1
- UniProtKB/Swiss-Prot
- A0A7P0T9K5, Q7LGI1, Q96RK0, Q9UEG5, Q9Y6T1
-
XM_054320341.1 → XP_054176316.1 protein capicua homolog isoform X25
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_054320342.1 → XP_054176317.1 protein capicua homolog isoform X26
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_054320335.1 → XP_054176310.1 protein capicua homolog isoform X20
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_054320336.1 → XP_054176311.1 protein capicua homolog isoform X19
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_054320338.1 → XP_054176313.1 protein capicua homolog isoform X22
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_054320339.1 → XP_054176314.1 protein capicua homolog isoform X23
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_054320337.1 → XP_054176312.1 protein capicua homolog isoform X21
- UniProtKB/TrEMBL
- A0A0A0MQR4, A7XAK3
-
XM_054320340.1 → XP_054176315.1 protein capicua homolog isoform X24
- UniProtKB/TrEMBL
-
A7XAK3
-
XM_054320343.1 → XP_054176318.1 protein capicua homolog isoform X27
- UniProtKB/TrEMBL
-
A7XAK3