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    C13orf46 chromosome 13 open reading frame 46 [ Homo sapiens (human) ]

    Gene ID: 100507747, updated on 10-Dec-2024

    Summary

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    Official Symbol
    C13orf46provided by HGNC
    Official Full Name
    chromosome 13 open reading frame 46provided by HGNC
    Primary source
    HGNC:HGNC:53786
    See related
    Ensembl:ENSG00000283199 AllianceGenome:HGNC:53786
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 2.7), stomach (RPKM 1.1) and 7 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See C13orf46 in Genome Data Viewer
    Location:
    13q34
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (113926514..113974076, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (113137335..113186857, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (114743219..114743487, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 454 Neighboring gene long intergenic non-protein coding RNA 452 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:114616152-114617351 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114622697-114623581 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8045 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114638965-114639466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114639467-114639966 Neighboring gene SWI/SNF complex interacting GAS6 enhancer non-coding RNA Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114748299-114748799 Neighboring gene RAS p21 protein activator 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114789740-114790579 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114796667-114797608 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:114801666-114802865 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114804717-114805611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8046 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114812769-114813560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114813561-114814350 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114829337-114829856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8049 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8048 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5554 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8050 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5555 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8051 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8052 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8053 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8054 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:114838566-114839765 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:114848666-114849865 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:114852049-114853248 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114875547-114876182 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:114876854-114877008 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:114878083-114878678 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:114878884-114880083 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114880307-114881171 Neighboring gene uncharacterized LOC124903221 Neighboring gene RASA3 intronic transcript 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Homology

    Clone Names

    • FLJ35331

    General protein information

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    Preferred Names
    uncharacterized protein C13orf46

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001365455.2 → NP_001352384.1  uncharacterized protein C13orf46

      Status: VALIDATED

      Source sequence(s)
      AUXG01000135, BX537329, FP565324
      Consensus CDS
      CCDS91842.1
      UniProtKB/Swiss-Prot
      A0A1B0GUA9
      Related
      ENSP00000490032.2, ENST00000636427.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      113926514..113974076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047429985.1 → XP_047285941.1  uncharacterized protein C13orf46 isoform X3

      UniProtKB/Swiss-Prot
      A0A1B0GUA9

    2. XM_047429981.1 → XP_047285937.1  uncharacterized protein C13orf46 isoform X1

    3. XM_047429983.1 → XP_047285939.1  uncharacterized protein C13orf46 isoform X1

    4. XM_047429982.1 → XP_047285938.1  uncharacterized protein C13orf46 isoform X1

    5. XM_047429984.1 → XP_047285940.1  uncharacterized protein C13orf46 isoform X2

    6. XM_006719995.4 → XP_006720058.4  uncharacterized protein C13orf46 isoform X4

    7. XM_047429986.1 → XP_047285942.1  uncharacterized protein C13orf46 isoform X5

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_011332698.1 Reference GRCh38.p14 PATCHES

      Range
      9109..37102 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054331713.1 → XP_054187688.1  uncharacterized protein C13orf46 isoform X7

    2. XM_054331712.1 → XP_054187687.1  uncharacterized protein C13orf46 isoform X6

    3. XM_054331711.1 → XP_054187686.1  uncharacterized protein C13orf46 isoform X3

      UniProtKB/Swiss-Prot
      A0A1B0GUA9

    4. XM_054331715.1 → XP_054187690.1  uncharacterized protein C13orf46 isoform X8

    5. XM_054331709.1 → XP_054187684.1  uncharacterized protein C13orf46 isoform X1

    6. XM_054331710.1 → XP_054187685.1  uncharacterized protein C13orf46 isoform X2

    7. XM_054331714.1 → XP_054187689.1  uncharacterized protein C13orf46 isoform X4

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      113137335..113186857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054373971.1 → XP_054229946.1  uncharacterized protein C13orf46 isoform X11

    2. XM_054373967.1 → XP_054229942.1  uncharacterized protein C13orf46 isoform X9

    3. XM_054373969.1 → XP_054229944.1  uncharacterized protein C13orf46 isoform X9

    4. XM_054373968.1 → XP_054229943.1  uncharacterized protein C13orf46 isoform X9

    5. XM_054373970.1 → XP_054229945.1  uncharacterized protein C13orf46 isoform X10

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1B0GUA9.2 GenPept UniProtKB/Swiss-Prot:A0A1B0GUA9

    Gene LinkOut

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