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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_030034.1 RefSeqGene
- Range
-
5041..30232
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001244666.3 → NP_001231595.1 syntaxin-5 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, which results in a frameshift and early stop codon compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
BC002645, CB155395
- Consensus CDS
-
CCDS58140.1
- UniProtKB/Swiss-Prot
-
Q13190
- Related
- ENSP00000367129.4, ENST00000377897.8
- Conserved Domains (3) summary
-
- COG5325
Location:94 → 301
- COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
- pfam11416
Location:53 → 74
- Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
- cl22856
Location:266 → 304
- SNARE; SNARE motif
-
NM_001330294.2 → NP_001317223.1 syntaxin-5 isoform 3
Status: REVIEWED
- Source sequence(s)
-
BE409085, BI820950, BT019647, BX537426
- Consensus CDS
-
CCDS81578.1
- UniProtKB/Swiss-Prot
-
Q13190
- Related
- ENSP00000378182.1, ENST00000394690.5
- Conserved Domains (3) summary
-
- COG5325
Location:128 → 270
- COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
- cd15844
Location:212 → 284
- SNARE_syntaxin5; SNARE motif of syntaxin 5
- pfam11416
Location:1 → 18
- Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
-
NM_003164.5 → NP_003155.2 syntaxin-5 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (1).
- Source sequence(s)
-
BE409085, CB155395, U26648
- Consensus CDS
-
CCDS8038.2
- UniProtKB/Swiss-Prot
- B2R8T2, F8W8Q9, Q13190, Q5U0D4, Q7Z3T6, Q9BUG1
- Related
- ENSP00000294179.3, ENST00000294179.8
- Conserved Domains (3) summary
-
- COG5325
Location:182 → 324
- COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
- cd15844
Location:266 → 338
- SNARE_syntaxin5; SNARE motif of syntaxin 5
- pfam11416
Location:53 → 74
- Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
62806860..62832051 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011545224.4 → XP_011543526.1 syntaxin-5 isoform X2
- UniProtKB/TrEMBL
-
B4DKR0
- Conserved Domains (2) summary
-
- cd15844
Location:170 → 242
- SNARE_syntaxin5; SNARE motif of syntaxin 5
- cl26014
Location:86 → 228
- SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
-
XM_047427505.1 → XP_047283461.1 syntaxin-5 isoform X1
- UniProtKB/Swiss-Prot
- B2R8T2, F8W8Q9, Q13190, Q5U0D4, Q7Z3T6, Q9BUG1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
62796253..62821448 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054369769.1 → XP_054225744.1 syntaxin-5 isoform X2
- UniProtKB/TrEMBL
-
B4DKR0
-
XM_054369768.1 → XP_054225743.1 syntaxin-5 isoform X1
- UniProtKB/Swiss-Prot
- B2R8T2, F8W8Q9, Q13190, Q5U0D4, Q7Z3T6, Q9BUG1