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    Ttc36 tetratricopeptide repeat domain 36 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300676, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ttc36provided by RGD
    Official Full Name
    tetratricopeptide repeat domain 36provided by RGD
    Primary source
    RGD:1359544
    See related
    EnsemblRapid:ENSRNOG00000075307 AllianceGenome:RGD:1359544
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in tyrosine metabolic process. Predicted to act upstream of or within central nervous system neuron development; learning or memory; and negative regulation of protein metabolic process. Orthologous to human TTC36 (tetratricopeptide repeat domain 36). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 863.0) and Kidney (RPKM 749.3) See more
    Orthologs
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    Genomic context

    See Ttc36 in Genome Data Viewer
    Location:
    8q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (54009522..54013129, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (45112737..45116345, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (49106374..49109981, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene archain 1 Neighboring gene intraflagellar transport 46 Neighboring gene transmembrane protein 25 Neighboring gene lysine methyltransferase 2A Neighboring gene U2 spliceosomal RNA Neighboring gene U6atac minor spliceosomal RNA

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    tetratricopeptide repeat protein 36
    Names
    TPR repeat protein 36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005546.1NP_001005546.1  tetratricopeptide repeat protein 36

      See identical proteins and their annotated locations for NP_001005546.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082024
      UniProtKB/Swiss-Prot
      Q66H45
      UniProtKB/TrEMBL
      A6J415
      Related
      ENSRNOP00000019933.4, ENSRNOT00000019933.5
      Conserved Domains (4) summary
      sd00006
      Location:4876
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:82111
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:47112
      TPR_11; TPR repeat
      pfam13424
      Location:79149
      TPR_12; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      54009522..54013129 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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