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    INPP5B inositol polyphosphate-5-phosphatase B [ Homo sapiens (human) ]

    Gene ID: 3633, updated on 27-Nov-2024

    Summary

    Official Symbol
    INPP5Bprovided by HGNC
    Official Full Name
    inositol polyphosphate-5-phosphatase Bprovided by HGNC
    Primary source
    HGNC:HGNC:6077
    See related
    Ensembl:ENSG00000204084 MIM:147264; AllianceGenome:HGNC:6077
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    5PTase
    Summary
    This gene encodes a member of a family of inositol polyphosphate-5-phosphatases. These enzymes function in the regulation of calcium signaling by inactivating inositol phosphates. The encoded protein is localized to the cytosol and mitochondria, and associates with membranes through an isoprenyl modification near the C-terminus. Alternatively spliced transcript variants of this gene have been described. [provided by RefSeq, Jul 2014]
    Expression
    Ubiquitous expression in lymph node (RPKM 6.6), ovary (RPKM 6.5) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See INPP5B in Genome Data Viewer
    Location:
    1p34.3
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (37860697..37947057, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (37727581..37813950, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38326369..38412729, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 680 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 681 Neighboring gene chromosome 1 open reading frame 122 Neighboring gene yrdC N6-threonylcarbamoyltransferase domain containing Neighboring gene metal regulatory transcription factor 1 Neighboring gene ribosomal protein S2 pseudogene 13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 682 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:38330961-38332160 Neighboring gene RNA, U6 small nuclear 584, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 777 Neighboring gene uncharacterized LOC124904043 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 778 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:38396367-38396866 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 683 Neighboring gene uncharacterized LOC105378651 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38412547-38413076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38414283-38414956 Neighboring gene splicing factor 3a subunit 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 780 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 781 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38456307-38456852 Neighboring gene RNA, U6 small nuclear 510, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC65156, MGC71303

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in flagellated sperm motility IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in in utero embryonic development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in inositol phosphate metabolic process TAS
    Traceable Author Statement
    more info
     
    involved_in phosphatidylinositol dephosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of protein processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum-Golgi intermediate compartment IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in phagocytic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    type II inositol 1,4,5-trisphosphate 5-phosphatase
    Names
    inositol polyphosphate-5-phosphatase, 75kDa
    phosphoinositide 5-phosphatase
    NP_001284363.1
    NP_001337156.1
    NP_001337157.1
    NP_001352749.1
    NP_001352750.1
    NP_001352751.1
    NP_001352752.1
    NP_001352753.1
    NP_001352754.1
    NP_005531.2
    XP_011539694.1
    XP_011539695.1
    XP_016856695.2
    XP_054192392.1
    XP_054192393.1
    XP_054192394.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001297434.2NP_001284363.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 2 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
      Source sequence(s)
      AK022846, AL929472, BC042529, BC062317, DC398675
      Consensus CDS
      CCDS72760.1
      UniProtKB/TrEMBL
      B3KMW4
      Related
      ENSP00000362118.1, ENST00000373027.5
      Conserved Domains (2) summary
      cd09093
      Location:101394
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:528748
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
    2. NM_001350227.2NP_001337156.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus than isoform 1. Variants 3 and 4 encode the same protein (isoform 3).
      Source sequence(s)
      AK022846, AL929472, BC042529, BC062317, DC398675
      UniProtKB/TrEMBL
      B3KMW4
      Conserved Domains (2) summary
      cd09093
      Location:45338
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:472692
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
    3. NM_001350228.1NP_001337157.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus than isoform 1. Variants 3 and 4 encode the same protein (isoform 3).
      Source sequence(s)
      AK022846, AL603790, AL929472, BC042529, BC062317, M74161
      UniProtKB/TrEMBL
      B3KMW4
      Conserved Domains (2) summary
      cd09093
      Location:45338
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:472692
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
    4. NM_001365820.1NP_001352749.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 1 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5), as well as variant 1, encodes isoform 1.
      Source sequence(s)
      AL603790, AL929472
      Consensus CDS
      CCDS41306.1
      UniProtKB/Swiss-Prot
      C9J6U5, P32019, Q5VSG9, Q5VSH0, Q5VSH1, Q658Q5, Q6P6D4, Q6PD53, Q86YE1
      Conserved Domains (3) summary
      cd09093
      Location:265558
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:692912
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
      pfam16776
      Location:6150
      INPP5B_PH; Type II inositol 1,4,5-trisphosphate 5-phosphatase PH domain
    5. NM_001365821.1NP_001352750.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 4 precursor

      Status: REVIEWED

      Source sequence(s)
      AL603790, AL929472
      UniProtKB/Swiss-Prot
      C9J6U5, P32019, Q5VSG9, Q5VSH0, Q5VSH1, Q658Q5, Q6P6D4, Q6PD53, Q86YE1
      Conserved Domains (3) summary
      cd09093
      Location:263556
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:690910
      RhoGAP_OCRL1; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and ...
      pfam16776
      Location:6148
      INPP5B_PH; Type II inositol 1,4,5-trisphosphate 5-phosphatase PH domain
    6. NM_001365822.1NP_001352751.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 5

      Status: REVIEWED

      Source sequence(s)
      AL603790, AL929472
      UniProtKB/TrEMBL
      B3KMW4
      Conserved Domains (3) summary
      cd09093
      Location:243536
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:670890
      RhoGAP_OCRL1; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and ...
      cl17171
      Location:63128
      PH-like; Pleckstrin homology-like domain
    7. NM_001365823.1NP_001352752.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 6

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8), as well as variant 9, encodes isoform 6.
      Source sequence(s)
      AL603790, AL929472
      UniProtKB/TrEMBL
      B3KMW4
      Conserved Domains (3) summary
      cd09093
      Location:200493
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:627847
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
      cl17171
      Location:2985
      PH-like; Pleckstrin homology-like domain
    8. NM_001365824.1NP_001352753.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 6

      Status: REVIEWED

      Description
      Transcript Variant: This variant (9), as well as variant 8, encodes isoform 6.
      Source sequence(s)
      AL603790, AL929472
      UniProtKB/TrEMBL
      B3KMW4
      Conserved Domains (3) summary
      cd09093
      Location:200493
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:627847
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
      cl17171
      Location:2985
      PH-like; Pleckstrin homology-like domain
    9. NM_001365825.1NP_001352754.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 7

      Status: REVIEWED

      Source sequence(s)
      AL603790, AL929472
      UniProtKB/TrEMBL
      B3KMW4
      Conserved Domains (3) summary
      cd09093
      Location:146439
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:573793
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
      cl17171
      Location:131
      PH-like; Pleckstrin homology-like domain
    10. NM_005540.3NP_005531.2  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform 1 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1 and 5 both encode the same isoform (1).
      Source sequence(s)
      AL603790, AL929472, BC042529, DA125087, M74161
      Consensus CDS
      CCDS41306.1
      UniProtKB/Swiss-Prot
      C9J6U5, P32019, Q5VSG9, Q5VSH0, Q5VSH1, Q658Q5, Q6P6D4, Q6PD53, Q86YE1
      Related
      ENSP00000362115.3, ENST00000373024.8
      Conserved Domains (3) summary
      cd09093
      Location:265558
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:692912
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
      pfam16776
      Location:6150
      INPP5B_PH; Type II inositol 1,4,5-trisphosphate 5-phosphatase PH domain

    RNA

    1. NR_158628.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL603790, AL929472
    2. NR_158629.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL603790, AL929472
    3. NR_158630.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL603790, AL929472
    4. NR_158631.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL603790, AL929472

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      37860697..37947057 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011541393.3XP_011539695.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X2

      See identical proteins and their annotated locations for XP_011539695.1

      UniProtKB/TrEMBL
      B3KMW4
      Conserved Domains (2) summary
      cd09093
      Location:72365
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:499719
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
    2. XM_011541392.3XP_011539694.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X2

      See identical proteins and their annotated locations for XP_011539694.1

      UniProtKB/TrEMBL
      B3KMW4
      Conserved Domains (2) summary
      cd09093
      Location:72365
      INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
      cd04380
      Location:499719
      RhoGAP_OCRL1; RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate ...
    3. XM_017001206.2XP_016856695.2  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X1

    RNA

    1. XR_946643.3 RNA Sequence

    2. XR_007059978.1 RNA Sequence

    3. XR_007059977.1 RNA Sequence

    4. XR_946644.4 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      37727581..37813950 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054336419.1XP_054192394.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X2

    2. XM_054336418.1XP_054192393.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X2

    3. XM_054336417.1XP_054192392.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X1

    RNA

    1. XR_008486033.1 RNA Sequence

    2. XR_008486034.1 RNA Sequence

    3. XR_008486032.1 RNA Sequence

    4. XR_008486035.1 RNA Sequence