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    Nop16 NOP16 nucleolar protein [ Mus musculus (house mouse) ]

    Gene ID: 28126, updated on 9-Dec-2024

    Summary

    Official Symbol
    Nop16provided by MGI
    Official Full Name
    NOP16 nucleolar proteinprovided by MGI
    Primary source
    MGI:MGI:107862
    See related
    Ensembl:ENSMUSG00000025869 AllianceGenome:MGI:107862
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D13Wsu177e
    Summary
    Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in nucleoplasm. Predicted to be active in nucleolus. Is expressed in embryo and extraembryonic component. Orthologous to human NOP16 (NOP16 nucleolar protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in liver E14 (RPKM 14.3), CNS E11.5 (RPKM 12.5) and 26 other tissues See more
    Orthologs
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    Genomic context

    See Nop16 in Genome Data Viewer
    Location:
    13 B1; 13 28.83 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (54732004..54737921, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (54584191..54590097, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene SUMO-interacting motifs containing 1 Neighboring gene RIKEN cDNA 4833439L19 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:54666808-54666917 Neighboring gene ADP-ribosylation factor-like 10 Neighboring gene predicted gene, 24195 Neighboring gene STARR-positive B cell enhancer ABC_E927 Neighboring gene HIG1 domain family, member 2A Neighboring gene clathrin light chain B Neighboring gene STARR-seq mESC enhancer starr_34588 Neighboring gene STARR-seq mESC enhancer starr_34589

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    nucleolar protein 16
    Names
    NOP16 nucleolar protein homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178605.4NP_848720.1  nucleolar protein 16

      See identical proteins and their annotated locations for NP_848720.1

      Status: PROVISIONAL

      Source sequence(s)
      AC155262
      Consensus CDS
      CCDS26531.1
      UniProtKB/Swiss-Prot
      Q8C2P2, Q921K0, Q9CPT5
      UniProtKB/TrEMBL
      D3Z7M5
      Related
      ENSMUSP00000026987.6, ENSMUST00000026987.12
      Conserved Domains (2) summary
      pfam09420
      Location:20153
      Nop16; Ribosome biogenesis protein Nop16
      cl21456
      Location:143177
      Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      54732004..54737921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030247292.2XP_030103152.1  nucleolar protein 16 isoform X1

      Conserved Domains (1) summary
      pfam09420
      Location:2065
      Nop16; Ribosome biogenesis protein Nop16