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    LINC03124 long intergenic non-protein coding RNA 3124 [ Homo sapiens (human) ]

    Gene ID: 29798, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC03124provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3124provided by HGNC
    Primary source
    HGNC:HGNC:25077
    See related
    Ensembl:ENSG00000287151 AllianceGenome:HGNC:25077
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C2orf27; C2orf27A; C2orf27B
    Expression
    Broad expression in brain (RPKM 3.1), testis (RPKM 3.1) and 23 other tissues See more
    Orthologs
    all
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    Genomic context

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    See LINC03124 in Genome Data Viewer
    Location:
    2q21.1-q21.2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (131682499..131767404)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (132117144..132202925)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (132440072..132524977)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene POTE ankyrin domain family member K, pseudogene Neighboring gene RNA, U6 small nuclear 617, pseudogene Neighboring gene long intergenic non-protein coding RNA 1087 Neighboring gene GRAM domain containing 4 pseudogene 8 Neighboring gene CRISPRi-validated cis-regulatory element chr2.4815 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:132429946-132430584 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:132430585-132431224 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:132431225-132431862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16539 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11970 Neighboring gene TOMM40 pseudogene 4 Neighboring gene neurobeachin pseudogene 2 Neighboring gene uncharacterized LOC100419921 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:132523951-132524452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:132532914-132533461 Neighboring gene CDRT15 pseudogene 4 Neighboring gene CDRT15 pseudogene 3 Neighboring gene apical junction component 1 homolog pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. Majewska M, et al. Int J Mol Sci, 2018 Jun 27. PMID 29954144, Free PMC Article
    2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Hillier LW, et al. Nature, 2005 Apr 7. PMID 15815621
    3. Large-scale concatenation cDNA sequencing. Yu W, et al. Genome Res, 1997 Apr. PMID 9110174, Free PMC Article
    4. A "double adaptor" method for improved shotgun library construction. Andersson B, et al. Anal Biochem, 1996 Apr 5. PMID 8619474
    5. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Other Names

    • uncharacterized protein C2orf27
    • uncharacterized protein C2orf27A

    Clone Names

    • MGC138394, DKFZp686A02119

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_149013.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093724, AC093838
      Related
      ENST00000779799.1

    2. NR_149014.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093724, AC093838
      Related
      ENST00000666411.2

    3. NR_149015.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093724, AC093838
      Related
      ENST00000779869.1

    4. NR_149016.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093724, AC093838

    5. NR_167887.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093724, AC093838
      Related
      ENST00000779776.1

    6. NR_167888.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093724, AC093838
      Related
      ENST00000779785.1

    7. NR_167889.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093724, AC093838
      Related
      ENST00000779795.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      131682499..131767404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187528.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      1..71290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      132117144..132202925
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001354871.2: Suppressed sequence

      Description
      NM_001354871.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    2. NM_001354872.2: Suppressed sequence

      Description
      NM_001354872.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    3. NM_013310.5: Suppressed sequence

      Description
      NM_013310.5: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

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