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    Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306375, updated on 2-Nov-2024

    Summary

    Official Symbol
    Csgalnact1provided by RGD
    Official Full Name
    chondroitin sulfate N-acetylgalactosaminyltransferase 1provided by RGD
    Primary source
    RGD:1307618
    See related
    EnsemblRapid:ENSRNOG00000013024 AllianceGenome:RGD:1307618
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Chgn; RGD1307618
    Summary
    Predicted to enable hexosyltransferase activity. Predicted to be involved in chondroitin sulfate proteoglycan biosynthetic process and nucleotide-sugar metabolic process. Predicted to act upstream of or within chondroitin sulfate metabolic process; extracellular matrix organization; and skeletal system development. Predicted to be located in Golgi cisterna membrane. Predicted to be active in Golgi apparatus. Orthologous to human CSGALNACT1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 54.0), Thymus (RPKM 53.9) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Csgalnact1 in Genome Data Viewer
    Location:
    16p14
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (25761946..26097306)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (20995210..21330586)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (22704318..23075071)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482365 Neighboring gene integrator complex subunit 10 Neighboring gene ribosomal protein L10, pseudogene 7 Neighboring gene splicing factor YJU2-like Neighboring gene uncharacterized LOC120097455 Neighboring gene SH2 domain containing 4A Neighboring gene uncharacterized LOC134482490

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    chondroitin sulfate N-acetylgalactosaminyltransferase 1
    Names
    chondroitin beta1,4 N-acetylgalactosaminyltransferase
    NP_001100779.1
    XP_006253089.1
    XP_006253090.1
    XP_006253091.1
    XP_008769336.1
    XP_008769338.1
    XP_017455585.1
    XP_038950422.1
    XP_038950423.1
    XP_063131449.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107309.1NP_001100779.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

      See identical proteins and their annotated locations for NP_001100779.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474045
      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Related
      ENSRNOP00000098230.1, ENSRNOT00000120590.2
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      25761946..26097306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063275379.1XP_063131449.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
    2. XM_039094494.2XP_038950422.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    3. XM_017600096.3XP_017455585.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    4. XM_008771114.4XP_008769336.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_008769336.1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    5. XM_039094495.2XP_038950423.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    6. XM_006253028.5XP_006253090.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_006253090.1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    7. XM_008771116.4XP_008769338.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_008769338.1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    8. XM_006253029.5XP_006253091.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_006253091.1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    9. XM_006253027.4XP_006253089.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_006253089.1

      UniProtKB/TrEMBL
      B5DEY9, F7FDK7
      Conserved Domains (1) summary
      cl11394
      Location:68505
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold