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    Taf7l TATA-box binding protein associated factor 7-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363493, updated on 3-Dec-2024

    Summary

    Official Symbol
    Taf7lprovided by RGD
    Official Full Name
    TATA-box binding protein associated factor 7-likeprovided by RGD
    Primary source
    RGD:1564898
    See related
    EnsemblRapid:ENSRNOG00000026315 AllianceGenome:RGD:1564898
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564898
    Summary
    Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within flagellated sperm motility and spermatid development. Predicted to be located in cytoplasm and male germ cell nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF7L (TATA-box binding protein associated factor 7 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 101.2) See more
    Orthologs
    NEW
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    Genomic context

    See Taf7l in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (101953508..101968336, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (97660222..97675241, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (105292338..105308554, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene centromere protein I Neighboring gene dystrophin related protein 2 Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA aspartic acid (anticodon AUC) 1 Neighboring gene translocase of inner mitochondrial membrane 8A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    contributes_to RNA polymerase II general transcription initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within spermatid development ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    NOT located_in chromocenter ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in male germ cell nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    transcription initiation factor TFIID subunit 7-like
    Names
    TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001434284.1NP_001421213.1  transcription initiation factor TFIID subunit 7-like isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZWV0, D4AC01
    2. NM_001434285.1NP_001421214.1  transcription initiation factor TFIID subunit 7-like isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I6AD81

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      101953508..101968336 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039099902.2XP_038955830.1  transcription initiation factor TFIID subunit 7-like isoform X1

      Related
      ENSRNOP00000083355.1, ENSRNOT00000102985.2
      Conserved Domains (1) summary
      pfam04658
      Location:123302
      TAFII55_N; TAFII55 protein conserved region
    2. XM_039099903.2XP_038955831.1  transcription initiation factor TFIID subunit 7-like isoform X2

      Conserved Domains (1) summary
      pfam04658
      Location:80259
      TAFII55_N; TAFII55 protein conserved region

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001135877.1: Suppressed sequence

      Description
      NM_001135877.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.