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    LINC01595 long intergenic non-protein coding RNA 1595 [ Homo sapiens (human) ]

    Gene ID: 102725176, updated on 4-Jan-2025

    Summary

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    Official Symbol
    LINC01595provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1595provided by HGNC
    Primary source
    HGNC:HGNC:51586
    See related
    AllianceGenome:HGNC:51586
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Implicated in prostate cancer. [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in duodenum (RPKM 3.2), adrenal (RPKM 2.6) and 2 other tissues See more
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    Genomic context

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    See LINC01595 in Genome Data Viewer
    Location:
    19q13.33
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (47863290..47869361, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (50694155..50700293, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene cone-rod homeobox Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:48342812-48343337 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:48352354-48353156 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:48353157-48353960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:48366933-48367434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:48367435-48367934 Neighboring gene tetrapeptide repeat homeobox 2 Neighboring gene sulfotransferase family 2A member 1 Neighboring gene Sharpr-MPRA regulatory region 10552 Neighboring gene small NF90 (ILF3) associated RNA A12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. Xu XR, et al. Proc Natl Acad Sci U S A, 2001 Dec 18. PMID 11752456, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      47863290..47869361 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_936005.3 RNA Sequence

    2. XR_936006.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      50694155..50700293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007089182.1 RNA Sequence

    2. XR_007089183.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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