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    SEMA6A-AS1 SEMA6A antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101927233, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SEMA6A-AS1provided by HGNC
    Official Full Name
    SEMA6A antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:51110
    See related
    Ensembl:ENSG00000248445 AllianceGenome:HGNC:51110
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTB-118N6.3
    Expression
    Ubiquitous expression in placenta (RPKM 13.5), brain (RPKM 12.7) and 25 other tissues See more
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    Genomic context

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    See SEMA6A-AS1 in Genome Data Viewer
    Location:
    5q23.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (116447498..116471673)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (116959951..116984105)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (115783194..115807369)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene COMM domain containing 10 Neighboring gene microRNA 12130 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:115696405-115697201 Neighboring gene uncharacterized LOC101927190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16258 Neighboring gene semaphorin 6A Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:115823690-115824889 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:115853599-115854798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:115858520-115859094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:115859095-115859667 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:115894513-115895385 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:115895386-115896257 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:115907796-115908577 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16259 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:115913215-115913850 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:115913851-115914484 Neighboring gene SEMA6A antisense RNA 2 Neighboring gene ribosomal protein S14 pseudogene 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109879.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010296
      Related
      ENST00000508424.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      116447498..116471673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      116959951..116984105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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