Otor otoraplin [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Otorprovided by MGI
Official Full Name: otoraplinprovided by MGI
Primary source: MGI:MGI:1888678
See related: Ensembl:ENSMUSG00000027416 AllianceGenome:MGI:1888678
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Fdp; MIA; MIAL; CDRAP
Summary: Acts upstream of or within cartilage condensation. Predicted to be located in Golgi apparatus and extracellular region. Is expressed in embryo; inner ear; otic capsule; and otocyst. Orthologous to human OTOR (otoraplin). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in CNS E14 (RPKM 2.3), limb E14.5 (RPKM 1.8) and 3 other tissues See more
Orthologs: human all
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Genomic context

Location:: 2 G1; 2 70.89 cM

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	2	NC_000068.8 (142920313..142923633)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	2	NC_000068.7 (143078393..143081713)

Chromosome 2 - NC_000068.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2)
Targeted (1) 1 citation

General gene information

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Markers

Otor (e-PCR), detects polymorphism
- UniSTS:224093

Otor (e-PCR), detects polymorphism
- UniSTS:209587

Gene Ontology Provided by MGI

Process	Evidence Code	Pubs
involved_in cartilage condensation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within cartilage condensation	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi apparatus	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in extracellular region	ISA Inferred from Sequence Alignment more info	PubMed

General protein information

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Preferred Names: otoraplin

Names: melanoma inhibitory activity-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.