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    Eva1b eva-1 homolog B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362597, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Eva1bprovided by RGD
    Official Full Name
    eva-1 homolog Bprovided by RGD
    Primary source
    RGD:1308876
    See related
    EnsemblRapid:ENSRNOG00000024818 AllianceGenome:RGD:1308876
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam176b; RGD1308876
    Summary
    Predicted to be located in membrane. Orthologous to human EVA1B (eva-1 homolog B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 214.9), Spleen (RPKM 142.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Eva1b in Genome Data Viewer
    Location:
    5q36
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (143711627..143716963)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (138427088..138429602)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (144160026..144161421)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 40 Neighboring gene uncharacterized LOC108351032 Neighboring gene SH3 domain containing 21 Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene uncharacterized LOC120103176

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein eva-1 homolog B
    Names
    family with sequence similarity 176, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108679.3 → NP_001102149.2  protein eva-1 homolog B isoform 1

      See identical proteins and their annotated locations for NP_001102149.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      B2RZB3
      Related
      ENSRNOP00000059335.1, ENSRNOT00000064972.3
      Conserved Domains (1) summary
      pfam14851
      Location:85 → 213
      FAM176; FAM176 family

    2. NM_001399219.1 → NP_001386148.1  protein eva-1 homolog B isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6IS94
      Conserved Domains (1) summary
      pfam14851
      Location:7 → 161
      FAM176; FAM176 family

    3. NM_001399220.1 → NP_001386149.1  protein eva-1 homolog B isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6IS94
      Conserved Domains (1) summary
      pfam14851
      Location:7 → 161
      FAM176; FAM176 family

    RNA

    1. NR_174171.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    2. NR_174172.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      143711627..143716963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006238889.3 → XP_006238951.1  protein eva-1 homolog B isoform X1

      See identical proteins and their annotated locations for XP_006238951.1

      UniProtKB/TrEMBL
      B2RZB3
      Conserved Domains (1) summary
      pfam14851
      Location:85 → 213
      FAM176; FAM176 family

    RNA

    1. XR_005504490.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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