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    LINC02347 long intergenic non-protein coding RNA 2347 [ Homo sapiens (human) ]

    Gene ID: 100128554, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02347provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2347provided by HGNC
    Primary source
    HGNC:HGNC:53269
    See related
    Ensembl:ENSG00000214043 AllianceGenome:HGNC:53269
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02347 in Genome Data Viewer
    Location:
    12q24.32
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (126442481..126472785)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (126450966..126481263)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (126927027..126957331)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903048 Neighboring gene long intergenic non-protein coding RNA 2825 Neighboring gene long intergenic non-protein coding RNA 2350 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:126932549-126933748 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:126937681-126938182 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:126938183-126938682 Neighboring gene family with sequence similarity 32 member E, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7999 Neighboring gene piggyBac transposable element derived 3 pseudogene Neighboring gene piggyBac transposable element derived 3 pseudogene 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    2. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Clone Names

    • MGC141882

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_130748.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005868, BC039370, BC121801
      Related
      ENST00000397346.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      126442481..126472785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      126450966..126481263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_015398.1: Suppressed sequence

      Description
      NR_015398.1: This RefSeq was permanently suppressed because currently there is insufficient support for the non-consensus splice sites in the transcript.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0VFX4.1 GenPept UniProtKB/Swiss-Prot:Q0VFX4

    Gene LinkOut

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