NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_052890.1 RefSeqGene
- Range
-
5003..521559
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001308330.2 → NP_001295259.1 syntaxin-binding protein 5-like isoform 2
See identical proteins and their annotated locations for NP_001295259.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. It encodes isoform 2 which is shorter compared to isoform 1. Variants 2, 4, and 5 all encode the same isoform (2).
- Source sequence(s)
-
AC078854, AC079841, AI279148, AK296544
- Consensus CDS
-
CCDS77799.1
- UniProtKB/TrEMBL
- B4DKF6, E9PFI2
- Related
- ENSP00000420019.1, ENST00000471454.6
- Conserved Domains (5) summary
-
- COG2319
Location:249 → 552
- WD40; WD40 repeat [General function prediction only]
- cd15893
Location:1095 → 1155
- R-SNARE_STXBP5; SNARE domain of STXBP5
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- pfam08366
Location:288 → 396
- LLGL; LLGL2
- cl29593
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001348343.2 → NP_001335272.1 syntaxin-binding protein 5-like isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (1).
- Source sequence(s)
-
AC072026, AC078854, AC078857, AC079841, AC128659
- Consensus CDS
-
CCDS43137.1
- UniProtKB/Swiss-Prot
- Q4G1B4, Q6PIC3, Q9Y2K9
- UniProtKB/TrEMBL
-
B4DKF6
- Related
- ENSP00000516710.1, ENST00000707001.1
- Conserved Domains (5) summary
-
- COG2319
Location:249 → 552
- WD40; WD40 repeat [General function prediction only]
- cd15893
Location:1119 → 1179
- R-SNARE_STXBP5; SNARE domain of STXBP5
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- pfam08366
Location:288 → 396
- LLGL; LLGL2
- cl29593
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001348344.2 → NP_001335273.1 syntaxin-binding protein 5-like isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. It encodes isoform 2 which is shorter compared to isoform 1. Variants 2, 4, and 5 all encode the same isoform (2).
- Source sequence(s)
-
AC072026, AC078854, AC078857, AC079841, AC128659
- Consensus CDS
-
CCDS77799.1
- UniProtKB/TrEMBL
- B4DKF6, E9PFI2
- Conserved Domains (5) summary
-
- COG2319
Location:249 → 552
- WD40; WD40 repeat [General function prediction only]
- cd15893
Location:1095 → 1155
- R-SNARE_STXBP5; SNARE domain of STXBP5
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- pfam08366
Location:288 → 396
- LLGL; LLGL2
- cl29593
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001348345.2 → NP_001335274.1 syntaxin-binding protein 5-like isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. It encodes isoform 2 which is shorter compared to isoform 1. Variants 2, 4, and 5 all encode the same isoform (2).
- Source sequence(s)
-
AC072026, AC078854, AC078857, AC079841, AC128659
- Consensus CDS
-
CCDS77799.1
- UniProtKB/TrEMBL
- B4DKF6, E9PFI2
- Conserved Domains (5) summary
-
- COG2319
Location:249 → 552
- WD40; WD40 repeat [General function prediction only]
- cd15893
Location:1095 → 1155
- R-SNARE_STXBP5; SNARE domain of STXBP5
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- pfam08366
Location:288 → 396
- LLGL; LLGL2
- cl29593
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_014980.3 → NP_055795.1 syntaxin-binding protein 5-like isoform 1
See identical proteins and their annotated locations for NP_055795.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1). Variants 1 and 3 both encode the same isoform (1).
- Source sequence(s)
-
AB023223, AC079841, AI279148, DC324331
- Consensus CDS
-
CCDS43137.1
- UniProtKB/Swiss-Prot
- Q4G1B4, Q6PIC3, Q9Y2K9
- UniProtKB/TrEMBL
-
B4DKF6
- Related
- ENSP00000273666.6, ENST00000273666.10
- Conserved Domains (5) summary
-
- COG2319
Location:249 → 552
- WD40; WD40 repeat [General function prediction only]
- cd15893
Location:1119 → 1179
- R-SNARE_STXBP5; SNARE domain of STXBP5
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- pfam08366
Location:288 → 396
- LLGL; LLGL2
- cl29593
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
RNA
-
NR_145516.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC072026, AC078854, AC078857, AC079841, AC128659
-
NR_145517.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) is shorter at the 3' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC072026, AC078857, AC128659
- Related
-
ENST00000461772.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
120908205..121424761
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017007534.2 → XP_016863023.1 syntaxin-binding protein 5-like isoform X3
-
XM_011513331.3 → XP_011511633.1 syntaxin-binding protein 5-like isoform X4
- Conserved Domains (4) summary
-
- COG2319
Location:109 → 494
- WD40; WD40 repeat [General function prediction only]
- pfam08366
Location:289 → 396
- LLGL; LLGL2
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
XM_011513333.4 → XP_011511635.1 syntaxin-binding protein 5-like isoform X6
- Conserved Domains (4) summary
-
- COG2319
Location:109 → 494
- WD40; WD40 repeat [General function prediction only]
- pfam08366
Location:289 → 396
- LLGL; LLGL2
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
XM_006713825.4 → XP_006713888.1 syntaxin-binding protein 5-like isoform X1
See identical proteins and their annotated locations for XP_006713888.1
- UniProtKB/Swiss-Prot
- Q4G1B4, Q6PIC3, Q9Y2K9
- UniProtKB/TrEMBL
-
B4DKF6
- Conserved Domains (5) summary
-
- COG2319
Location:249 → 552
- WD40; WD40 repeat [General function prediction only]
- cd15893
Location:1119 → 1179
- R-SNARE_STXBP5; SNARE domain of STXBP5
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- pfam08366
Location:288 → 396
- LLGL; LLGL2
- cl29593
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
XM_017007535.3 → XP_016863024.1 syntaxin-binding protein 5-like isoform X6
- Conserved Domains (4) summary
-
- COG2319
Location:109 → 494
- WD40; WD40 repeat [General function prediction only]
- pfam08366
Location:289 → 396
- LLGL; LLGL2
- sd00039
Location:74 → 107
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:74 → 281
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
XM_047449249.1 → XP_047305205.1 syntaxin-binding protein 5-like isoform X2
- UniProtKB/TrEMBL
-
B4DKF6
-
XM_011513332.2 → XP_011511634.1 syntaxin-binding protein 5-like isoform X5
- Conserved Domains (1) summary
-
- cd15893
Location:635 → 695
- R-SNARE_STXBP5; SNARE domain of STXBP5
RNA
-
XR_924217.3 RNA Sequence
-
XR_001740373.2 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
123628071..124144685
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054348472.1 → XP_054204447.1 syntaxin-binding protein 5-like isoform X3
-
XM_054348473.1 → XP_054204448.1 syntaxin-binding protein 5-like isoform X4
-
XM_054348475.1 → XP_054204450.1 syntaxin-binding protein 5-like isoform X6
-
XM_054348470.1 → XP_054204445.1 syntaxin-binding protein 5-like isoform X1
- UniProtKB/Swiss-Prot
- Q4G1B4, Q6PIC3, Q9Y2K9
- UniProtKB/TrEMBL
-
B4DKF6
-
XM_054348476.1 → XP_054204451.1 syntaxin-binding protein 5-like isoform X6
-
XM_054348471.1 → XP_054204446.1 syntaxin-binding protein 5-like isoform X2
- UniProtKB/TrEMBL
-
B4DKF6
-
XM_054348474.1 → XP_054204449.1 syntaxin-binding protein 5-like isoform X5
RNA
-
XR_008486853.1 RNA Sequence
-
XR_008486854.1 RNA Sequence