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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001277196.2 → NP_001264125.1 PHD finger protein 20-like protein 1 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (4) has the same N- and C-termini but is shorter compared to isoform 1. Variants 4 and 5 encode the same isoform (4).
- Source sequence(s)
-
AF228727, AF230666, BC144654, DB498348
- Consensus CDS
-
CCDS75791.1
- UniProtKB/TrEMBL
-
A0A0A0MQS0
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:657 → 702
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:184 → 291
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:292 → 388
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
NM_001362971.2 → NP_001349900.1 PHD finger protein 20-like protein 1 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AF228727, AF230666, BC144654, DB498348
- Consensus CDS
-
CCDS75791.1
- UniProtKB/TrEMBL
-
A0A0A0MQS0
- Related
- ENSP00000220847.8, ENST00000220847.8
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:657 → 702
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:184 → 291
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:292 → 388
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
NM_016018.5 → NP_057102.4 PHD finger protein 20-like protein 1 isoform 1
See identical proteins and their annotated locations for NP_057102.4
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and it encodes the longest protein (isoform 1).
- Source sequence(s)
-
AF230666, AK057961, BC002822, DA196349, DB498348
- Consensus CDS
-
CCDS6367.2
- UniProtKB/Swiss-Prot
- A8MW92, A8MZC9, Q86U89, Q86W43, Q96BT0, Q9H702, Q9HBK3, Q9NYR3, Q9Y381
- Related
- ENSP00000378784.2, ENST00000395386.7
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:683 → 728
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:210 → 317
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:318 → 383
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
NM_198513.2 → NP_940915.1 PHD finger protein 20-like protein 1 isoform 3
See identical proteins and their annotated locations for NP_940915.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has multiple differences, compared to variant 1. The resulting protein (isoform 3) has a shorter and distinct C-terminus when it is compared to isoform 1.
- Source sequence(s)
-
AI913146, AK023711, BC015211, DB498348
- Consensus CDS
-
CCDS6368.1
- UniProtKB/TrEMBL
-
A8MUE8
- Related
- ENSP00000338269.4, ENST00000337920.8
- Conserved Domains (2) summary
-
- cd20454
Location:86 → 144
- Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
- cl17705
Location:3 → 68
- MBT; mbt repeat
RNA
-
NR_156424.2 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AF228727, AF230666, BC144654, DA557575, DB498348
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000008.11 Reference GRCh38.p14 Primary Assembly
- Range
-
132775388..132848807
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011517075.1 → XP_011515377.1 PHD finger protein 20-like protein 1 isoform X1
See identical proteins and their annotated locations for XP_011515377.1
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:688 → 733
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:214 → 322
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:323 → 388
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_011517077.1 → XP_011515379.1 PHD finger protein 20-like protein 1 isoform X3
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:687 → 732
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:214 → 321
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:322 → 387
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_011517078.1 → XP_011515380.1 PHD finger protein 20-like protein 1 isoform X5
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:684 → 729
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:210 → 318
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:319 → 384
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_047421819.1 → XP_047277775.1 PHD finger protein 20-like protein 1 isoform X6
-
XM_011517079.1 → XP_011515381.1 PHD finger protein 20-like protein 1 isoform X7
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:683 → 728
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:210 → 317
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:318 → 383
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_011517080.1 → XP_011515382.1 PHD finger protein 20-like protein 1 isoform X9
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:658 → 703
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:184 → 292
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:293 → 358
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_047421823.1 → XP_047277779.1 PHD finger protein 20-like protein 1 isoform X10
- UniProtKB/TrEMBL
-
F8W9L8
- Related
- ENSP00000378788.2, ENST00000395390.6
-
XM_011517081.1 → XP_011515383.1 PHD finger protein 20-like protein 1 isoform X11
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:657 → 702
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:184 → 291
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:292 → 357
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_011517076.1 → XP_011515378.1 PHD finger protein 20-like protein 1 isoform X1
See identical proteins and their annotated locations for XP_011515378.1
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:688 → 733
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:214 → 322
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:323 → 388
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_047421815.1 → XP_047277771.1 PHD finger protein 20-like protein 1 isoform X2
-
XM_047421816.1 → XP_047277772.1 PHD finger protein 20-like protein 1 isoform X3
-
XM_047421817.1 → XP_047277773.1 PHD finger protein 20-like protein 1 isoform X4
-
XM_047421818.1 → XP_047277774.1 PHD finger protein 20-like protein 1 isoform X5
-
XM_047421820.1 → XP_047277776.1 PHD finger protein 20-like protein 1 isoform X6
-
XM_017013509.1 → XP_016868998.1 PHD finger protein 20-like protein 1 isoform X7
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:683 → 728
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:210 → 317
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:318 → 383
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_047421821.1 → XP_047277777.1 PHD finger protein 20-like protein 1 isoform X8
- UniProtKB/Swiss-Prot
- A8MW92, A8MZC9, Q86U89, Q86W43, Q96BT0, Q9H702, Q9HBK3, Q9NYR3, Q9Y381
- Related
- ENSP00000482945.1, ENST00000622263.4
-
XM_017013510.1 → XP_016868999.1 PHD finger protein 20-like protein 1 isoform X9
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:658 → 703
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:184 → 292
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:293 → 358
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_047421822.1 → XP_047277778.1 PHD finger protein 20-like protein 1 isoform X10
- UniProtKB/TrEMBL
-
F8W9L8
-
XM_017013511.1 → XP_016869000.1 PHD finger protein 20-like protein 1 isoform X11
- Conserved Domains (5) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd15633
Location:657 → 702
- PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
- pfam12618
Location:184 → 291
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:292 → 357
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_011517088.1 → XP_011515390.1 PHD finger protein 20-like protein 1 isoform X13
See identical proteins and their annotated locations for XP_011515390.1
- Conserved Domains (4) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- pfam12618
Location:214 → 322
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:323 → 388
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_017013516.1 → XP_016869005.1 PHD finger protein 20-like protein 1 isoform X14
- UniProtKB/TrEMBL
-
A0A0A8K9A6
- Related
-
ENST00000315808.14
- Conserved Domains (4) summary
-
- cd04508
Location:90 → 135
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- pfam12618
Location:210 → 317
- DUF3776; Protein of unknown function (DUF3776)
- pfam16660
Location:318 → 383
- PHD20L1_u1; PHD finger protein 20-like protein 1
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_047421825.1 → XP_047277781.1 PHD finger protein 20-like protein 1 isoform X15
-
XM_047421826.1 → XP_047277782.1 PHD finger protein 20-like protein 1 isoform X16
-
XM_047421827.1 → XP_047277783.1 PHD finger protein 20-like protein 1 isoform X16
-
XM_017013517.2 → XP_016869006.1 PHD finger protein 20-like protein 1 isoform X17
- UniProtKB/TrEMBL
-
A8MUE8
- Related
- ENSP00000378777.1, ENST00000395379.5
- Conserved Domains (2) summary
-
- cd20454
Location:86 → 144
- Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
- cl17705
Location:3 → 68
- MBT; mbt repeat
-
XM_047421824.1 → XP_047277780.1 PHD finger protein 20-like protein 1 isoform X12
Alternate T2T-CHM13v2.0
Genomic
-
NC_060932.1 Alternate T2T-CHM13v2.0
- Range
-
133898574..133971990
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054360553.1 → XP_054216528.1 PHD finger protein 20-like protein 1 isoform X1
-
XM_054360556.1 → XP_054216531.1 PHD finger protein 20-like protein 1 isoform X3
-
XM_054360559.1 → XP_054216534.1 PHD finger protein 20-like protein 1 isoform X5
-
XM_054360561.1 → XP_054216536.1 PHD finger protein 20-like protein 1 isoform X6
-
XM_054360563.1 → XP_054216538.1 PHD finger protein 20-like protein 1 isoform X7
-
XM_054360566.1 → XP_054216541.1 PHD finger protein 20-like protein 1 isoform X9
-
XM_054360569.1 → XP_054216544.1 PHD finger protein 20-like protein 1 isoform X10
- UniProtKB/TrEMBL
-
F8W9L8
-
XM_054360570.1 → XP_054216545.1 PHD finger protein 20-like protein 1 isoform X11
-
XM_054360554.1 → XP_054216529.1 PHD finger protein 20-like protein 1 isoform X1
-
XM_054360555.1 → XP_054216530.1 PHD finger protein 20-like protein 1 isoform X2
-
XM_054360557.1 → XP_054216532.1 PHD finger protein 20-like protein 1 isoform X3
-
XM_054360558.1 → XP_054216533.1 PHD finger protein 20-like protein 1 isoform X4
-
XM_054360560.1 → XP_054216535.1 PHD finger protein 20-like protein 1 isoform X5
-
XM_054360562.1 → XP_054216537.1 PHD finger protein 20-like protein 1 isoform X6
-
XM_054360564.1 → XP_054216539.1 PHD finger protein 20-like protein 1 isoform X7
-
XM_054360565.1 → XP_054216540.1 PHD finger protein 20-like protein 1 isoform X8
- UniProtKB/Swiss-Prot
- A8MW92, A8MZC9, Q86U89, Q86W43, Q96BT0, Q9H702, Q9HBK3, Q9NYR3, Q9Y381
-
XM_054360567.1 → XP_054216542.1 PHD finger protein 20-like protein 1 isoform X9
-
XM_054360568.1 → XP_054216543.1 PHD finger protein 20-like protein 1 isoform X10
- UniProtKB/TrEMBL
-
F8W9L8
-
XM_054360571.1 → XP_054216546.1 PHD finger protein 20-like protein 1 isoform X11
-
XM_054360573.1 → XP_054216548.1 PHD finger protein 20-like protein 1 isoform X13
-
XM_054360574.1 → XP_054216549.1 PHD finger protein 20-like protein 1 isoform X14
- UniProtKB/TrEMBL
-
A0A0A8K9A6
-
XM_054360575.1 → XP_054216550.1 PHD finger protein 20-like protein 1 isoform X15
-
XM_054360576.1 → XP_054216551.1 PHD finger protein 20-like protein 1 isoform X16
-
XM_054360577.1 → XP_054216552.1 PHD finger protein 20-like protein 1 isoform X16
-
XM_054360578.1 → XP_054216553.1 PHD finger protein 20-like protein 1 isoform X17
- UniProtKB/TrEMBL
-
A8MUE8
-
XM_054360572.1 → XP_054216547.1 PHD finger protein 20-like protein 1 isoform X12
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_024878.1: Suppressed sequence
- Description
- NM_024878.1: This RefSeq was permanently suppressed because it represents actually 5' partial CDS and its 5' sequence was intronic sequence.
-
NM_032205.3: Suppressed sequence
- Description
- NM_032205.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.