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    algK alginate biosynthesis protein AlgK [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 878771, updated on 24-Aug-2024

    Summary

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    Gene symbol
    algK
    Gene description
    alginate biosynthesis protein AlgK
    Locus tag
    PA3543
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (3967025..3968452)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene glycosyltransferase alg8 Neighboring gene alginate biosynthesis protein Alg44 Neighboring gene alginate production protein AlgE Neighboring gene alginate-c5-mannuronan-epimerase AlgG Neighboring gene alginate biosynthesis protein AlgX

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deletion of algK in mucoid Pseudomonas aeruginosa blocks alginate polymer formation and results in uronic acid secretion. Jain S, et al. J Bacteriol, 1998 Feb. PMID 9457868, Free PMC Article
    2. AlgK is a TPR-containing protein and the periplasmic component of a novel exopolysaccharide secretin. Keiski CL, et al. Structure, 2010 Feb 10. PMID 20159471, Free PMC Article
    3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within alginic acid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within alginic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within biofilm formation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alginate biosynthesis protein AlgK
    NP_252233.1
    • Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      3967025..3968452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_252233.1 alginate biosynthesis protein AlgK [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_252233.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P96956
      Conserved Domains (3) summary
      PRK11447
      Location:33 → 137
      PRK11447; cellulose synthase subunit BcsC; Provisional
      COG0790
      Location:92 → 358
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:293 → 322
      SLR; SLR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P96956.1

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