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    Nxpe3 neurexophilin and PC-esterase domain family, member 3 [ Mus musculus (house mouse) ]

    Gene ID: 385658, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Nxpe3provided by MGI
    Official Full Name
    neurexophilin and PC-esterase domain family, member 3provided by MGI
    Primary source
    MGI:MGI:2686598
    See related
    Ensembl:ENSMUSG00000075033 AllianceGenome:MGI:2686598
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm611; Fam55c; Gm1752
    Summary
    Orthologous to human NXPE3 (neurexophilin and PC-esterase domain family member 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in testis adult (RPKM 3.3), genital fat pad adult (RPKM 2.8) and 24 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Nxpe3 in Genome Data Viewer
    Location:
    16 C1.1; 16 33.65 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (55660316..55717467, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (55839953..55897104, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41041 Neighboring gene predicted gene, 26369 Neighboring gene STARR-positive B cell enhancer mm9_chr16:55820985-55821286 Neighboring gene STARR-positive B cell enhancer mm9_chr16:55822089-55822389 Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta Neighboring gene STARR-positive B cell enhancer ABC_E7463 Neighboring gene STARR-positive B cell enhancer ABC_E10911 Neighboring gene STARR-positive B cell enhancer ABC_E1926 Neighboring gene adaptor-related protein complex 3, sigma 1 subunit pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E7464 Neighboring gene conserved helix-loop-helix ubiquitous kinase pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E7465 Neighboring gene centrosomal protein 97 Neighboring gene ribosomal protein L11 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC15606

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    NXPE family member 3
    Names
    family with sequence similarity 55, member C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134457.1 → NP_001127929.1  NXPE family member 3

      See identical proteins and their annotated locations for NP_001127929.1

      Status: VALIDATED

      Source sequence(s)
      AC165151, AEKQ02019924
      Consensus CDS
      CCDS49870.1
      UniProtKB/TrEMBL
      B9EKK6
      Related
      ENSMUSP00000097296.4, ENSMUST00000099705.5
      Conserved Domains (1) summary
      pfam06312
      Location:75 → 284
      Neurexophilin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      55660316..55717467 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030249167.1 → XP_030105027.1  NXPE family member 3 isoform X2

      UniProtKB/TrEMBL
      B9EKK6
      Conserved Domains (1) summary
      pfam06312
      Location:75 → 284
      Neurexophilin

    2. XM_011245943.3 → XP_011244245.1  NXPE family member 3 isoform X1

      See identical proteins and their annotated locations for XP_011244245.1

      Conserved Domains (1) summary
      pfam06312
      Location:75 → 275
      Neurexophilin

    3. XM_006522325.4 → XP_006522388.1  NXPE family member 3 isoform X2

      See identical proteins and their annotated locations for XP_006522388.1

      UniProtKB/TrEMBL
      B9EKK6
      Conserved Domains (1) summary
      pfam06312
      Location:75 → 284
      Neurexophilin

    4. XM_011245941.3 → XP_011244243.1  NXPE family member 3 isoform X1

      See identical proteins and their annotated locations for XP_011244243.1

      Conserved Domains (1) summary
      pfam06312
      Location:75 → 275
      Neurexophilin

    5. XM_011245944.3 → XP_011244246.1  NXPE family member 3 isoform X1

      See identical proteins and their annotated locations for XP_011244246.1

      Conserved Domains (1) summary
      pfam06312
      Location:75 → 275
      Neurexophilin

    6. XM_011245942.2 → XP_011244244.1  NXPE family member 3 isoform X1

      See identical proteins and their annotated locations for XP_011244244.1

      Conserved Domains (1) summary
      pfam06312
      Location:75 → 275
      Neurexophilin
    Nucleotide Protein Strain
    Heading Accession and Version

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