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    MAP3K9-DT MAP3K9 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100506411, updated on 10-Dec-2024

    Summary

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    Official Symbol
    MAP3K9-DTprovided by HGNC
    Official Full Name
    MAP3K9 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:53189
    See related
    Ensembl:ENSG00000259153 AllianceGenome:HGNC:53189
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    lincNMR
    Expression
    Broad expression in esophagus (RPKM 2.2), brain (RPKM 1.5) and 19 other tissues See more
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    Genomic context

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    See MAP3K9-DT in Genome Data Viewer
    Location:
    14q24.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (70808784..70816048)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (65014821..65022202)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (71275501..71282765)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5887 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5889 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:71120238-71120824 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8659 Neighboring gene tetratricopeptide repeat domain 9 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:71133100-71133600 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:71133601-71134101 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:71164525-71165724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8660 Neighboring gene long intergenic non-protein coding RNA 1269 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8661 Neighboring gene mitogen-activated protein kinase kinase kinase 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:71208701-71209202 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8664 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8666 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5891 Neighboring gene Sharpr-MPRA regulatory region 11364/13366 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5892 Neighboring gene uncharacterized LOC124903341 Neighboring gene TMEM183A pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. The lncRNA lincNMR regulates nucleotide metabolism via a YBX1 - RRM2 axis in cancer. Gandhi M, et al. Nat Commun, 2020 Jun 25. PMID 32587247, Free PMC Article
    2. APOBEC3B expression is promoted by lincNMR collaborating with TGF-β-Smad pathway. Ota K, et al. Carcinogenesis, 2023 May 15. PMID 36335471

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. APOBEC3B expression is promoted by lincNMR collaborating with TGF-beta-Smad pathway.
      Title: APOBEC3B expression is promoted by lincNMR collaborating with TGF-β-Smad pathway.
    2. The lncRNA lincNMR regulates nucleotide metabolism via a YBX1 - RRM2 axis in cancer.
      Title: The lncRNA lincNMR regulates nucleotide metabolism via a YBX1 - RRM2 axis in cancer.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • long intergenic noncoding RNA-nucleotide metabolism regulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_184163.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004816

    2. NR_184164.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004816

    3. NR_184165.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004816
      Related
      ENST00000557691.3

    4. NR_184166.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004816

    5. NR_184167.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004816

    6. NR_184168.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004816

    7. NR_184169.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004816

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      70808784..70816048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      65014821..65022202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials