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    SNTG2-AS1 SNTG2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101060391, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SNTG2-AS1provided by HGNC
    Official Full Name
    SNTG2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:54058
    See related
    Ensembl:ENSG00000235688 AllianceGenome:HGNC:54058
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in endometrium (RPKM 5.5), testis (RPKM 5.1) and 6 other tissues See more
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    Genomic context

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    See SNTG2-AS1 in Genome Data Viewer
    Location:
    2p25.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (949634..951392, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (949567..951325, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (945320..947078, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1115 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:816439-816939 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:826030-826932 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:826933-827834 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:850078-851277 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:863929-865128 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:875979-876480 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:886383-886882 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:905231-905732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:906278-906778 Neighboring gene long intergenic non-protein coding RNA 1939 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:932826-933706 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:954785-955304 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:955305-955822 Neighboring gene syntrophin gamma 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:1073673-1074189 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:1086561-1087062 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:1104105-1105304 Neighboring gene uncharacterized LOC124905965 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:1260844-1260999 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:1265169-1266368 Neighboring gene Sharpr-MPRA regulatory region 1386 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:1309663-1310386 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:1310387-1311109 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:1312058-1312678 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:1312679-1313298 Neighboring gene uncharacterized LOC105373359

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • AC116614.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136151.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CD519625, DB544287, DB545731
      Related
      ENST00000758547.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      949634..951392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      949567..951325 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials