gid-7 CTLH domain-containing protein;WD_REPEATS_REGION domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: gid-7
Official Full Name: CTLH domain-containing protein;WD_REPEATS_REGION domain-containing protein
Primary source: WormBase:WBGene00021482
Locus tag: CELE_Y39H10A.6
See related: AllianceGenome:WB:WBGene00021482
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of GID complex. Orthologous to human WDR26 (WD repeat domain 26). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See gid-7 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 9

Sequence:: Chromosome: V; NC_003283.11 (3749392..3757074, complement)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y39H10A_224.b (e-PCR)
- UniSTS:322824

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Process	Evidence Code	Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of GID complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: CTLH domain-containing protein;WD_REPEATS_REGION domain-containing protein

NP_001317841.1

Confirmed by transcript evidence

NP_001317842.1

Confirmed by transcript evidence

NP_504039.5

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

3749392..3757074 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_071638.8 → NP_504039.5 CTLH domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_504039.5

Status: REVIEWED

UniProtKB/TrEMBL

Q965W8

Conserved Domains (3) summary

smart00668
Location:92 → 140

CTLH; C-terminal to LisH motif

sd00039
Location:258 → 293

7WD40; WD40 repeat [structural motif]

cl29593
Location:254 → 582

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
NM_001330805.3 → NP_001317841.1 WD_REPEATS_REGION domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A163UTK6

Conserved Domains (2) summary

sd00039
Location:31 → 77

7WD40; WD40 repeat [structural motif]

cl29593
Location:1 → 314

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
NM_001330806.3 → NP_001317842.1 WD_REPEATS_REGION domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A168HAJ0

Conserved Domains (2) summary

sd00039
Location:65 → 105

7WD40; WD40 repeat [structural motif]

cl29593
Location:19 → 243

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...