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    • Showing Current items.

    D2085.7 Integrase [ Caenorhabditis elegans ]

    Gene ID: 183960, updated on 9-Dec-2024

    Summary

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    Official Symbol
    D2085.7
    Official Full Name
    Integrase
    Primary source
    WormBase:WBGene00008432
    Locus tag
    CELE_D2085.7
    See related
    AllianceGenome:WB:WBGene00008432
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ubiquitin-like protein transferase activity. Predicted to be involved in autophagosome assembly; glycophagy; and nucleophagy. Predicted to be active in phagophore assembly site. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See D2085.7 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    7
    Sequence:
    Chromosome: II; NC_003280.10 (8641381..8648227)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Transmembrane protein 47 Neighboring gene ncRNA Neighboring gene Glutamine-dependent carbamoyl-phosphate synthase Neighboring gene Ubiquitin-like-conjugating enzyme ATG10 Neighboring gene PIGA GPI anchor biosynthesis domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ubiquitin-like protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in autophagosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in glycophagy IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in nucleophagy IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in phagophore assembly site IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Integrase
    NP_001254165.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      8641381..8648227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001267236.4 → NP_001254165.1  Integrase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254165.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18995
      Conserved Domains (1) summary
      pfam03987
      Location:66 → 114
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    RNA

    1. NR_051453.2 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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