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    • Showing Current items.

    Y48C3A.20 tRNA pseudouridine(55) synthase [ Caenorhabditis elegans ]

    Gene ID: 174977, updated on 9-Dec-2024

    Summary

    Official Symbol
    Y48C3A.20
    Official Full Name
    tRNA pseudouridine(55) synthase
    Primary source
    WormBase:WBGene00012998
    Locus tag
    CELE_Y48C3A.20
    See related
    AllianceGenome:WB:WBGene00012998
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable pseudouridine synthase activity. Predicted to be involved in tRNA pseudouridine synthesis. Orthologous to human PUS10 (pseudouridine synthase 10). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See Y48C3A.20 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    7
    Sequence:
    Chromosome: II; NC_003280.10 (13369607..13376296)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA Neighboring gene Flocculation protein FLO11;Serine-rich adhesin for platelets Neighboring gene DNA topoisomerase

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables pseudouridine synthase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables tRNA pseudouridine(55) synthase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in tRNA pseudouridine synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    tRNA pseudouridine(55) synthase
    NP_001364616.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      13369607..13376296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001377890.1NP_001364616.1  tRNA pseudouridine(55) synthase [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U287
      Conserved Domains (1) summary
      cl28383
      Location:201451
      Pus10; tRNA U54 and U55 pseudouridine synthase Pus10 [Translation, ribosomal structure and biogenesis]