cpna-5 Copine family protein 5 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: cpna-5
Official Full Name: Copine family protein 5
Primary source: WormBase:WBGene00007044
Locus tag: CELE_B0495.10
See related: AllianceGenome:WB:WBGene00007044
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Is expressed in neurons. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See cpna-5 in Genome Data Viewer

Location:: chromosome: II

Exon count:: 12

Sequence:: Chromosome: II; NC_003280.10 (7711905..7718591, complement)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

B0495.10 (e-PCR)
- UniSTS:308396

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables calcium-dependent phospholipid binding	IBA Inferred from Biological aspect of Ancestor more info
enables calcium-dependent phospholipid binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in cellular response to calcium ion	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Copine family protein 5

NP_001367323.1

Partially confirmed by transcript evidence

NP_495622.2

Confirmed by transcript evidence

NP_871897.2

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

7711905..7718591 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_063221.5 → NP_495622.2 Copine family protein 5 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_495622.2

Status: REVIEWED

UniProtKB/Swiss-Prot

B0M0L5, B0M0L6, B0M0L7, Q09219

Conserved Domains (2) summary

cd04047
Location:208 → 322

C2B_Copine; C2 domain second repeat in Copine

cl00057
Location:328 → 578

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
NM_001381505.2 → NP_001367323.1 Copine family protein 5 [Caenorhabditis elegans]

Status: REVIEWED

Conserved Domains (2) summary

cd04047
Location:208 → 322

C2B_Copine; C2 domain second repeat in Copine

cl00057
Location:328 → 573

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
NM_182097.6 → NP_871897.2 Copine family protein 5 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_871897.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q09219

Conserved Domains (2) summary

cd04047
Location:149 → 263

C2B_Copine; C2 domain second repeat in Copine

cl00057
Location:269 → 514

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...