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    Ccdc92b coiled-coil domain containing 92B [ Mus musculus (house mouse) ]

    Gene ID: 432582, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ccdc92bprovided by MGI
    Official Full Name
    coiled-coil domain containing 92Bprovided by MGI
    Primary source
    MGI:MGI:3588240
    See related
    Ensembl:ENSMUSG00000069814 AllianceGenome:MGI:3588240
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E130309D14Rik
    Summary
    Orthologous to human CCDC92B (coiled-coil domain containing 92B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in liver E14.5 (RPKM 9.4), liver E14 (RPKM 7.6) and 16 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc92b in Genome Data Viewer
    Location:
    11 B5; 11 45.76 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (74510428..74532342)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (74619594..74641516)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 1 subfamily D member 2 Neighboring gene RAP1 GTPase activating protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E7014 Neighboring gene STARR-seq mESC enhancer starr_29957 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:74369680-74369789 Neighboring gene STARR-seq mESC enhancer starr_29960 Neighboring gene STARR-seq mESC enhancer starr_29961 Neighboring gene STARR-seq mESC enhancer starr_29962 Neighboring gene predicted gene, 50590 Neighboring gene STARR-positive B cell enhancer ABC_E3971 Neighboring gene clustered mitochondria homolog Neighboring gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 Neighboring gene STARR-seq mESC enhancer starr_29966

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing 92B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013784.1 → NP_001013806.1  coiled-coil domain-containing 92B

      Status: VALIDATED

      Source sequence(s)
      AL645971
      Consensus CDS
      CCDS25033.1
      UniProtKB/TrEMBL
      B9EKG1, Q5SUE3
      Related
      ENSMUSP00000098429.3, ENSMUST00000100866.3
      Conserved Domains (2) summary
      COG1196
      Location:41 → 188
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam14916
      Location:43 → 99
      CCDC92; Coiled-coil domain of unknown function

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      74510428..74532342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246111.2 → XP_030101971.1  coiled-coil domain-containing 92B isoform X1

      UniProtKB/TrEMBL
      B9EKG1
      Conserved Domains (2) summary
      COG1196
      Location:5 → 152
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam14916
      Location:7 → 63
      CCDC92; Coiled-coil domain of unknown function

    2. XM_006533659.5 → XP_006533722.1  coiled-coil domain-containing 92B isoform X1

      See identical proteins and their annotated locations for XP_006533722.1

      UniProtKB/TrEMBL
      B9EKG1
      Conserved Domains (2) summary
      COG1196
      Location:5 → 152
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam14916
      Location:7 → 63
      CCDC92; Coiled-coil domain of unknown function
    Nucleotide Protein Strain
    Heading Accession and Version

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