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    PIK3CD-AS2 PIK3CD antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 101929074, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PIK3CD-AS2provided by HGNC
    Official Full Name
    PIK3CD antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:51334
    See related
    Ensembl:ENSG00000231789 AllianceGenome:HGNC:51334
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in ovary (RPKM 1.7), thyroid (RPKM 1.6) and 21 other tissues See more
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    Genomic context

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    See PIK3CD-AS2 in Genome Data Viewer
    Location:
    1p36.22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (9672426..9687574, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (9215200..9230348, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (9732484..9747632, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta Neighboring gene ATAC-STARR-seq lymphoblastoid active region 134 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 135 Neighboring gene PIK3CD antisense RNA 1 Neighboring gene ribosomal protein L26 pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 136 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 229 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:9748072-9748266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:9749677-9750360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:9750361-9751042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:9761057-9761631 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9769519-9770216 Neighboring gene MPRA-validated peak57 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9775415-9776390 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9776391-9777366 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 231 Neighboring gene uncharacterized LOC124903839 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:9778914-9780113 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9780296-9781272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9781273-9782247 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:9785121-9785329 Neighboring gene calsyntenin 1 Neighboring gene MPRA-validated peak58 silencer Neighboring gene mitotic spindle organizing protein 1 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Adams MD, et al. Nature, 1995 Sep 28. PMID 7566098

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126366.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AL691449
      Related
      ENST00000415330.5

    2. NR_126367.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate internal exon, resulting in a shorter transcript than variant 1.
      Source sequence(s)
      AL691449
      Related
      ENST00000775830.1

    3. NR_126368.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an exon and its transcription terminates earlier than variant 1, resulting in a shorter transcript.
      Source sequence(s)
      BC038541, BI763597

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      9672426..9687574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      9215200..9230348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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