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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009307.2 RefSeqGene
- Range
-
28385..59705
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_032951.3 → NP_116569.1 carbohydrate-responsive element-binding protein isoform alpha
See identical proteins and their annotated locations for NP_116569.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (alpha).
- Source sequence(s)
-
AF156603, AF245470, BC012925
- Consensus CDS
-
CCDS5553.1
- UniProtKB/Swiss-Prot
- C5HU02, C5HU03, C5HU04, Q96E48, Q9BY03, Q9BY04, Q9BY05, Q9BY06, Q9NP71, Q9Y2P3
- UniProtKB/TrEMBL
-
C5HU01
- Related
- ENSP00000320886.3, ENST00000313375.8
- Conserved Domains (2) summary
-
- cd00083
Location:648 → 708
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- cl21462
Location:694 → 735
- bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
-
NM_032952.3 → NP_116570.1 carbohydrate-responsive element-binding protein isoform beta
See identical proteins and their annotated locations for NP_116570.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1, resulting in a shorter protein (isoform beta).
- Source sequence(s)
-
AF156603, AF245471, BC012925
- Consensus CDS
-
CCDS47605.1
- UniProtKB/TrEMBL
-
C5HU01
- Related
- ENSP00000406296.2, ENST00000429400.6
- Conserved Domains (1) summary
-
- cd00083
Location:648 → 680
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
-
NM_032953.3 → NP_116571.1 carbohydrate-responsive element-binding protein isoform gamma
See identical proteins and their annotated locations for NP_116571.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site in the coding region, compared to variant 1, resulting in a shorter protein (isoform gamma).
- Source sequence(s)
-
AF156603, AF245472, BC012925
- Consensus CDS
-
CCDS47606.1
- UniProtKB/TrEMBL
-
C5HU01
- Related
- ENSP00000412330.2, ENST00000414749.6
- Conserved Domains (2) summary
-
- cd00083
Location:645 → 706
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- cl21462
Location:692 → 733
- bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
-
NM_032954.3 → NP_116572.1 carbohydrate-responsive element-binding protein isoform delta
See identical proteins and their annotated locations for NP_116572.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice site in the coding region, compared to variant 1, resulting in a shorter protein (isoform delta).
- Source sequence(s)
-
AF156603, AF245473, BC012925
- Consensus CDS
-
CCDS5554.1
- UniProtKB/TrEMBL
-
C5HU01
- Related
- ENSP00000346629.1, ENST00000354613.5
- Conserved Domains (1) summary
-
- cd00083
Location:645 → 678
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
RNA
-
NR_134541.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF245474, BC012925, BG772360
- Related
-
ENST00000345114.9
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
73593202..73647907 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047420437.1 → XP_047276393.1 carbohydrate-responsive element-binding protein isoform X9
-
XM_047420435.1 → XP_047276391.1 carbohydrate-responsive element-binding protein isoform X7
- UniProtKB/TrEMBL
-
C5HU01
-
XM_047420433.1 → XP_047276389.1 carbohydrate-responsive element-binding protein isoform X5
- UniProtKB/TrEMBL
-
C5HU01
- Related
- ENSP00000392636.1, ENST00000434326.5
-
XM_047420434.1 → XP_047276390.1 carbohydrate-responsive element-binding protein isoform X6
- UniProtKB/TrEMBL
-
C5HU01
-
XM_047420432.1 → XP_047276388.1 carbohydrate-responsive element-binding protein isoform X4
- UniProtKB/TrEMBL
-
C5HU01
-
XM_011516278.2 → XP_011514580.1 carbohydrate-responsive element-binding protein isoform X2
- UniProtKB/TrEMBL
-
C5HU01
- Conserved Domains (2) summary
-
- cd00083
Location:712 → 772
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam08614
Location:651 → 792
- ATG16; Autophagy protein 16 (ATG16)
-
XM_011516279.2 → XP_011514581.1 carbohydrate-responsive element-binding protein isoform X3
- UniProtKB/TrEMBL
-
C5HU01
- Conserved Domains (1) summary
-
- cd00083
Location:713 → 769
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
-
XM_011516277.2 → XP_011514579.1 carbohydrate-responsive element-binding protein isoform X1
- UniProtKB/TrEMBL
-
C5HU01
- Conserved Domains (2) summary
-
- cd00083
Location:713 → 773
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam08614
Location:652 → 793
- ATG16; Autophagy protein 16 (ATG16)
-
XM_047420436.1 → XP_047276392.1 carbohydrate-responsive element-binding protein isoform X8
-
XM_017012263.2 → XP_016867752.1 carbohydrate-responsive element-binding protein isoform X10
RNA
-
XR_007060040.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
74794073..74848925 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054358326.1 → XP_054214301.1 carbohydrate-responsive element-binding protein isoform X9
-
XM_054358324.1 → XP_054214299.1 carbohydrate-responsive element-binding protein isoform X7
- UniProtKB/TrEMBL
-
C5HU01
-
XM_054358322.1 → XP_054214297.1 carbohydrate-responsive element-binding protein isoform X5
- UniProtKB/TrEMBL
-
C5HU01
-
XM_054358323.1 → XP_054214298.1 carbohydrate-responsive element-binding protein isoform X6
- UniProtKB/TrEMBL
-
C5HU01
-
XM_054358321.1 → XP_054214296.1 carbohydrate-responsive element-binding protein isoform X4
- UniProtKB/TrEMBL
-
C5HU01
-
XM_054358319.1 → XP_054214294.1 carbohydrate-responsive element-binding protein isoform X2
- UniProtKB/TrEMBL
-
C5HU01
-
XM_054358320.1 → XP_054214295.1 carbohydrate-responsive element-binding protein isoform X3
- UniProtKB/TrEMBL
-
C5HU01
-
XM_054358318.1 → XP_054214293.1 carbohydrate-responsive element-binding protein isoform X1
- UniProtKB/TrEMBL
-
C5HU01
-
XM_054358325.1 → XP_054214300.1 carbohydrate-responsive element-binding protein isoform X8
-
XM_054358327.1 → XP_054214302.1 carbohydrate-responsive element-binding protein isoform X10
RNA
-
XR_008487623.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_032994.2: Suppressed sequence
- Description
- NM_032994.2: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.