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    4930488N24Rik RIKEN cDNA 4930488N24 gene [ Mus musculus (house mouse) ]

    Gene ID: 75011, updated on 22-Oct-2024

    Summary

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    Official Symbol
    4930488N24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930488N24 geneprovided by MGI
    Primary source
    MGI:MGI:1922261
    See related
    Ensembl:ENSMUSG00000123621 AllianceGenome:MGI:1922261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 11.7) See more
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    Genomic context

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    See 4930488N24Rik in Genome Data Viewer
    Location:
    17 A2; 17 8.95 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (14322079..14329407, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (14101817..14109145, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34107 Neighboring gene predicted gene 7358 Neighboring gene STARR-seq mESC enhancer starr_41890 Neighboring gene predicted gene, 34426 Neighboring gene STARR-seq mESC enhancer starr_41891 Neighboring gene dishevelled-binding antagonist of beta-catenin 2 Neighboring gene predicted gene, 34510

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    sperm motility kinase Y-like; uncharacterized protein LOC75011

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      14322079..14329407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011246738.1 → XP_011245040.1  sperm motility kinase Y-like isoform X2

      See identical proteins and their annotated locations for XP_011245040.1

      UniProtKB/TrEMBL
      A0A087WSA6, A0A3B2WD63
      Related
      ENSMUST00000259223.1
      Conserved Domains (2) summary
      cd14337
      Location:336 → 375
      UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
      cd14003
      Location:68 → 316
      STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

    2. XM_011246739.3 → XP_011245041.1  sperm motility kinase Y-like isoform X2

      See identical proteins and their annotated locations for XP_011245041.1

      UniProtKB/TrEMBL
      A0A087WSA6, A0A3B2WD63
      Conserved Domains (2) summary
      cd14337
      Location:336 → 375
      UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
      cd14003
      Location:68 → 316
      STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

    3. XM_011246736.1 → XP_011245038.1  sperm motility kinase Y-like isoform X1

      See identical proteins and their annotated locations for XP_011245038.1

      UniProtKB/TrEMBL
      A0A087WSA6, A0A3B2WD63
      Conserved Domains (2) summary
      cd14337
      Location:402 → 441
      UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
      cd14003
      Location:134 → 382
      STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

    4. XM_011246737.1 → XP_011245039.1  sperm motility kinase Y-like isoform X1

      See identical proteins and their annotated locations for XP_011245039.1

      UniProtKB/TrEMBL
      A0A087WSA6, A0A3B2WD63
      Conserved Domains (2) summary
      cd14337
      Location:402 → 441
      UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
      cd14003
      Location:134 → 382
      STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases
    Nucleotide Protein Strain
    Heading Accession and Version

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