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    yahA c-di-GMP-specific phosphodiesterase [ Escherichia coli O157:H7 str. Sakai ]

    Gene ID: 914464, updated on 10-Oct-2024

    Summary

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    Gene symbol
    yahA
    Gene description
    c-di-GMP-specific phosphodiesterase
    Locus tag
    ECs_0363
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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    Genomic context

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    Sequence:
    NC_002695.2 (383860..384948)

    NC_002695.2Genomic Context describing neighboring genes Neighboring gene choline transporter of high affinity Neighboring gene AidA-I family adhesin Neighboring gene pseudo Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002695.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
    2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
    3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
    4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    c-di-GMP-specific phosphodiesterase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002695.2 Reference assembly

      Range
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_308390.1 c-di-GMP-specific phosphodiesterase [Escherichia coli O157:H7 str. Sakai]

      See identical proteins and their annotated locations for NP_308390.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C3TNC3, Q8X6B9
      Conserved Domains (2) summary
      cd06170
      Location:26 → 80
      LuxR_C_like; C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many ...
      smart00052
      Location:110 → 350
      EAL; Putative diguanylate phosphodiesterase
    Nucleotide Protein
    Heading Accession and Version

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