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    Cfap20dc CFAP20 domain containing [ Mus musculus (house mouse) ]

    Gene ID: 74430, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Cfap20dcprovided by MGI
    Official Full Name
    CFAP20 domain containingprovided by MGI
    Primary source
    MGI:MGI:1926154
    See related
    Ensembl:ENSMUSG00000021747 AllianceGenome:MGI:1926154
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930452B06Rik; 4933406L09Rik
    Summary
    Is expressed in olfactory epithelium. Orthologous to human CFAP20DC (CFAP20 domain containing). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in testis adult (RPKM 3.8), bladder adult (RPKM 1.6) and 21 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Cfap20dc in Genome Data Viewer
    Location:
    14 A1; 14 4.87 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (13803434..14038602)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (8431171..8666336, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35877 Neighboring gene RIKEN cDNA 4930455B14 gene Neighboring gene predicted gene, 20241 Neighboring gene STARR-seq mESC enhancer starr_35874 Neighboring gene STARR-seq mESC enhancer starr_35873 Neighboring gene STARR-seq mESC enhancer starr_35872 Neighboring gene predicted gene, 46492 Neighboring gene STARR-seq mESC enhancer starr_35871 Neighboring gene predicted gene, 41095 Neighboring gene STARR-seq mESC enhancer starr_35870 Neighboring gene STARR-seq mESC enhancer starr_35869 Neighboring gene cyclin B1 pseudogene Neighboring gene RIKEN cDNA 2610318M16 gene Neighboring gene FAM3 metabolism regulating signaling molecule D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome-wide CRISPR Screen to Identify Genes that Suppress Transformation in the Presence of Endogenous Kras(G12D). Huang J, et al. Sci Rep, 2019 Nov 20. PMID 31748650, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein CFAP20DC
    Names
    uncharacterized protein C3orf67 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028934.3 → NP_083210.3  protein CFAP20DC

      See identical proteins and their annotated locations for NP_083210.3

      Status: VALIDATED

      Source sequence(s)
      AK019627, AK047451, AK133893, AV127568, AV327822
      Consensus CDS
      CCDS26814.1
      UniProtKB/Swiss-Prot
      E9QK14, Q6P2K3
      Related
      ENSMUSP00000100061.4, ENSMUST00000102996.4
      Conserved Domains (1) summary
      pfam05018
      Location:6 → 171
      DUF667; Protein of unknown function (DUF667)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      13803434..14038602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518106.5 → XP_006518169.1  protein CFAP20DC isoform X2

      See identical proteins and their annotated locations for XP_006518169.1

      Conserved Domains (1) summary
      pfam05018
      Location:7 → 63
      DUF667; Protein of unknown function (DUF667)

    2. XM_011244772.4 → XP_011243074.1  protein CFAP20DC isoform X1

      Conserved Domains (2) summary
      pfam05018
      Location:1 → 188
      DUF667; Protein of unknown function (DUF667)
      pfam15324
      Location:302 → 433
      TALPID3; Hedgehog signalling target

    3. XM_030248080.2 → XP_030103940.1  protein CFAP20DC isoform X4

      Conserved Domains (1) summary
      pfam05018
      Location:1 → 171
      DUF667; Protein of unknown function (DUF667)

    4. XM_006518107.2 → XP_006518170.1  protein CFAP20DC isoform X2

      See identical proteins and their annotated locations for XP_006518170.1

      Conserved Domains (1) summary
      pfam05018
      Location:7 → 63
      DUF667; Protein of unknown function (DUF667)

    5. XM_011244773.4 → XP_011243075.1  protein CFAP20DC isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6P2K3.2 GenPept UniProtKB/Swiss-Prot:Q6P2K3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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