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    Skida1 SKI/DACH domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 72668, updated on 9-Dec-2024

    Summary

    Official Symbol
    Skida1provided by MGI
    Official Full Name
    SKI/DACH domain containing 1provided by MGI
    Primary source
    MGI:MGI:1919918
    See related
    Ensembl:ENSMUSG00000054074 AllianceGenome:MGI:1919918
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DLN-1; 2810030E01Rik; 5730507N06Rik
    Summary
    Is expressed in several structures, including body cavity or lining; genitourinary system; nervous system; respiratory system; and vertebral axis musculature. Orthologous to human SKIDA1 (SKI/DACH domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in CNS E11.5 (RPKM 6.0), CNS E14 (RPKM 3.5) and 13 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Skida1 in Genome Data Viewer
    Location:
    2 A3; 2 12.83 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (18048510..18053627, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (18044087..18048449, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene H2A histone family member L2A Neighboring gene STARR-seq mESC enhancer starr_03796 Neighboring gene RIKEN cDNA A930004D18 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:17949221-17949330 Neighboring gene predicted gene, 33085 Neighboring gene predicted gene, 17762 Neighboring gene STARR-positive B cell enhancer ABC_E11122 Neighboring gene microRNA 7655 Neighboring gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 Neighboring gene STARR-seq mESC enhancer starr_03800 Neighboring gene predicted gene, 25147

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC59463

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    SKI/DACH domain-containing protein 1
    Names
    protein DLN-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028317.4NP_082593.2  SKI/DACH domain-containing protein 1

      See identical proteins and their annotated locations for NP_082593.2

      Status: VALIDATED

      Source sequence(s)
      AL928589
      Consensus CDS
      CCDS57154.1
      UniProtKB/Swiss-Prot
      A6PWY1, A6PWY2, Q80YR3, Q9CSH2
      UniProtKB/TrEMBL
      G3X9M2
      Related
      ENSMUSP00000088982.6, ENSMUST00000091420.6
      Conserved Domains (2) summary
      pfam02437
      Location:1095
      Ski_Sno; SKI/SNO/DAC family
      pfam15223
      Location:519907
      DUF4584; Domain of unknown function (DUF4584)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      18048510..18053627 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)