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    4930587E11Rik RIKEN cDNA 4930587E11 gene [ Mus musculus (house mouse) ]

    Gene ID: 75893, updated on 22-Oct-2024

    Summary

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    Official Symbol
    4930587E11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930587E11 geneprovided by MGI
    Primary source
    MGI:MGI:1923143
    See related
    Ensembl:ENSMUSG00000107563 AllianceGenome:MGI:1923143
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm44188; 4930523E13Rik
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 4930587E11Rik in Genome Data Viewer
    Location:
    6; 6 D3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (102243061..102313638)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (102266100..102336677)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16891 Neighboring gene predicted gene 9871 Neighboring gene STARR-seq mESC enhancer starr_16892 Neighboring gene STARR-seq mESC enhancer starr_16893 Neighboring gene STARR-seq mESC enhancer starr_16894 Neighboring gene STARR-seq mESC enhancer starr_16895 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene contactin 3 Neighboring gene STARR-seq mESC enhancer starr_16896 Neighboring gene STARR-seq mESC enhancer starr_16897 Neighboring gene predicted gene, 38870 Neighboring gene STARR-seq mESC enhancer starr_16898 Neighboring gene STARR-seq mESC enhancer starr_16902 Neighboring gene STARR-seq mESC enhancer starr_16903 Neighboring gene STARR-seq mESC enhancer starr_16904 Neighboring gene STARR-seq mESC enhancer starr_16907 Neighboring gene STARR-seq mESC enhancer starr_16908 Neighboring gene STARR-seq mESC enhancer starr_16909 Neighboring gene STARR-seq mESC enhancer starr_16910 Neighboring gene microRNA 6373

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131017.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC155328, AK015876, AK016361
      Related
      ENSMUST00000204857.2

    2. NR_131018.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in an internal exon and contains an alternate 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AK015876
      Related
      ENSMUST00000296907.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      102243061..102313638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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