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    SMIM14-DT SMIM14 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105374419, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SMIM14-DTprovided by HGNC
    Official Full Name
    SMIM14 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:53455
    See related
    Ensembl:ENSG00000255458 AllianceGenome:HGNC:53455
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 2.0), brain (RPKM 0.2) and 3 other tissues See more
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    Genomic context

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    See SMIM14-DT in Genome Data Viewer
    Location:
    4p14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (39639140..39666664)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (39608818..39636335)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (39640760..39668284)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15370 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21460 Neighboring gene UGDH antisense RNA 1 Neighboring gene small integral membrane protein 14 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21461 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21462 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21463 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21464 Neighboring gene RNA, U7 small nuclear 11 pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:39640427-39641144 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:39642916-39643511 Neighboring gene MPRA-validated peak5027 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21465 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21466 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21467 Neighboring gene ubiquitin conjugating enzyme E2 K Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21468 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15372 Neighboring gene RNA, 7SL, cytoplasmic 558, pseudogene Neighboring gene zinc finger and BTB domain containing 12B, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183842.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471
      Related
      ENST00000526807.3

    2. NR_183843.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471
      Related
      ENST00000657228.1

    3. NR_183844.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471
      Related
      ENST00000529314.2

    4. NR_183845.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471

    5. NR_183846.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471
      Related
      ENST00000667934.1

    6. NR_183847.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471
      Related
      ENST00000666863.1

    7. NR_183848.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471

    8. NR_183849.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471
      Related
      ENST00000659162.1

    9. NR_183850.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471

    10. NR_183851.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471

    11. NR_183852.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108471
      Related
      ENST00000719148.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      39639140..39666664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      39608818..39636335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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