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    LOC100507336 uncharacterized LOC100507336 [ Homo sapiens (human) ]

    Gene ID: 100507336, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC100507336
    Gene description
    uncharacterized LOC100507336
    See related
    Ensembl:ENSG00000228793
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 2.5), prostate (RPKM 1.1) and 3 other tissues See more
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    Genomic context

    See LOC100507336 in Genome Data Viewer
    Location:
    6p25.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (3593490..3720077, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (3462496..3589023, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (3593724..3720311, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 23 Neighboring gene HNF4 motif-containing MPRA enhancer 213 Neighboring gene uncharacterized LOC105374890 Neighboring gene Sharpr-MPRA regulatory region 2334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3413621-3414120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3415185-3415686 Neighboring gene Sharpr-MPRA regulatory region 10234 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:3427759-3428672 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23891 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23892 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:3446415-3446962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:3446963-3447509 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16853 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16854 Neighboring gene Sharpr-MPRA regulatory region 3383 Neighboring gene uncharacterized LOC643327 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:3490051-3490550 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:3511328-3512180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3540364-3540864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3563205-3563704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3568820-3569322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3579367-3580278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3603461-3603960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3724209-3724747 Neighboring gene TOMM5 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 15708 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3737712-3738338 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16855 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16856 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16857 Neighboring gene NANOG hESC enhancer GRCh37_chr6:3756018-3756884 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:3757047-3758012 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:3761087-3761600 Neighboring gene Sharpr-MPRA regulatory region 8997 Neighboring gene PX domain containing 1 Neighboring gene uncharacterized LOC124901244

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187641.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523, AL138881
      Related
      ENST00000668872.1
    2. NR_187642.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523, AL138881
      Related
      ENST00000659450.1
    3. NR_187643.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523, AL138881
      Related
      ENST00000661070.2
    4. NR_187644.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523
      Related
      ENST00000666680.3
    5. NR_187645.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523, AL138881
    6. NR_187646.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523
      Related
      ENST00000660793.1
    7. NR_187647.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523
      Related
      ENST00000655328.1
    8. NR_187648.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523, AL138881
      Related
      ENST00000670704.1
    9. NR_187649.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523, AL138881
      Related
      ENST00000669021.2
    10. NR_187650.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031943, AL033523, AL138881
      Related
      ENST00000669829.1
    11. NR_187651.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL033523
      Related
      ENST00000659072.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      3593490..3720077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      3462496..3589023 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)