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    LINC01449 long intergenic non-protein coding RNA 1449 [ Homo sapiens (human) ]

    Gene ID: 101928773, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01449provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1449provided by HGNC
    Primary source
    HGNC:HGNC:50791
    See related
    Ensembl:ENSG00000224017 AllianceGenome:HGNC:50791
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01449 in Genome Data Viewer
    Location:
    7p14.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (41101604..41133501)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (41259430..41291327)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (41141202..41173099)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene succinyl-CoA:glutarate-CoA transferase Neighboring gene uncharacterized LOC105375242 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:40924401-40925600 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:41045810-41047009 Neighboring gene long intergenic non-protein coding RNA 1450 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:41068008-41069207 Neighboring gene Sharpr-MPRA regulatory region 15680 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:41098757-41099608 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:41104940-41106139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25894 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:41146908-41148107 Neighboring gene uncharacterized LOC105375241 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18119 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25896 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25897 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25898 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:41174879-41175380 Neighboring gene uncharacterized LOC105375246 Neighboring gene uncharacterized LOC107986787 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:41507517-41508016

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • AC005022.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110832.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005022, BC033981
      Related
      ENST00000440213.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      41101604..41133501
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      41259430..41291327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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