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    C1orf87 chromosome 1 open reading frame 87 [ Homo sapiens (human) ]

    Gene ID: 127795, updated on 10-Dec-2024

    Summary

    Official Symbol
    C1orf87provided by HGNC
    Official Full Name
    chromosome 1 open reading frame 87provided by HGNC
    Primary source
    HGNC:HGNC:28547
    See related
    Ensembl:ENSG00000162598 MIM:618860; AllianceGenome:HGNC:28547
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CREF
    Expression
    Biased expression in testis (RPKM 1.8), lung (RPKM 1.6) and 3 other tissues See more
    Orthologs
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    Genomic context

    See C1orf87 in Genome Data Viewer
    Location:
    1p32.1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (59990394..60073770, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (59868848..59952337, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (60456066..60539442, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:60380537-60381736 Neighboring gene cytochrome P450 family 2 subfamily J member 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:60391793-60392328 Neighboring gene RNA, 7SL, cytoplasmic 475, pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:60505410-60506609 Neighboring gene piggyBac transposable element derived 4 pseudogene 8 Neighboring gene long intergenic non-protein coding RNA 2778 Neighboring gene uncharacterized LOC107984963

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Phenotypes

    BioGRID CRISPR Screen Phenotypes (19 hits/1241 screens)

    EBI GWAS Catalog

    Description
    Genome-wide association study of chronic periodontitis in a general German population.
    EBI GWAS Catalog

    Interactions

    General protein information

    Preferred Names
    uncharacterized protein C1orf87
    Names
    carcinoma-related EF-hand protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_152377.3 → NP_689590.1  uncharacterized protein C1orf87

      See identical proteins and their annotated locations for NP_689590.1

      Status: VALIDATED

      Source sequence(s)
      BC027878, CD707889
      Consensus CDS
      CCDS614.1
      UniProtKB/Swiss-Prot
      Q6ZU07, Q8IVS0, Q8N0U7
      UniProtKB/TrEMBL
      B3KWE0
      Related
      ENSP00000360244.3, ENST00000371201.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      59990394..60073770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017000307.2 → XP_016855796.1  uncharacterized protein C1orf87 isoform X1

      UniProtKB/TrEMBL
      B3KWE0
    2. XM_017000308.2 → XP_016855797.1  uncharacterized protein C1orf87 isoform X2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      59868848..59952337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054334397.1 → XP_054190372.1  uncharacterized protein C1orf87 isoform X1

      UniProtKB/TrEMBL
      B3KWE0
    2. XM_054334398.1 → XP_054190373.1  uncharacterized protein C1orf87 isoform X2

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