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    Nctc1 non-coding transcript 1 [ Mus musculus (house mouse) ]

    Gene ID: 330677, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Nctc1provided by MGI
    Official Full Name
    non-coding transcript 1provided by MGI
    Primary source
    MGI:MGI:1306816
    See related
    Ensembl:ENSMUSG00000087090 AllianceGenome:MGI:1306816
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rhit1; 9530074L01
    Summary
    Is expressed in skeletal muscle. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in mammary gland adult (RPKM 3.5) and lung adult (RPKM 0.4) See more
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    Genomic context

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    See Nctc1 in Genome Data Viewer
    Location:
    7 F5; 7 87.96 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (142098346..142112335, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (142544609..142558598, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene proline rich 33 Neighboring gene troponin T3, skeletal, fast Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:149724284-149724471 Neighboring gene mitochondrial ribosomal protein L23 Neighboring gene H19/Igf2 enhancer region Neighboring gene microRNA 675 Neighboring gene H19/Igf2 imprinting control region Neighboring gene H19, imprinted maternally expressed transcript Neighboring gene predicted gene, 33148 Neighboring gene H19 upstream conserved region 2 Neighboring gene H19 upstream conserved region 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Paternal imprints can be established on the maternal Igf2-H19 locus without altering replication timing of DNA. Cerrato F, et al. Hum Mol Genet, 2003 Dec 1. PMID 14532328
    2. Sequence of a 42-kb mouse region containing the imprinted H19 locus: identification of a novel muscle-specific transcription unit showing biallelic expression. Ishihara K, et al. Mamm Genome, 1998 Sep. PMID 9716667
    3. Comparative genomic sequencing identifies novel tissue-specific enhancers and sequence elements for methylation-sensitive factors implicated in Igf2/H19 imprinting. Ishihara K, et al. Genome Res, 2000 May. PMID 10810089, Free PMC Article
    4. Structure and expression of the mouse L23mrp gene downstream of the imprinted H19 gene: biallelic expression and lack of interaction with the H19 enhancers. Zubair M, et al. Genomics, 1997 Oct 15. PMID 9344651
    5. Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH. Mahy NL, et al. J Cell Biol, 2002 Dec 9. PMID 12473685, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1) 

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002452.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013548, AI594936, AK035596
      Related
      ENSMUST00000132167.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      142098346..142112335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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