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    4930578N18Rik RIKEN cDNA 4930578N18 gene [ Mus musculus (house mouse) ]

    Gene ID: 78215, updated on 22-Oct-2024

    Summary

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    Official Symbol
    4930578N18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930578N18 geneprovided by MGI
    Primary source
    MGI:MGI:1925465
    See related
    Ensembl:ENSMUSG00000116695 AllianceGenome:MGI:1925465
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 3.3) See more
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    Genomic context

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    See 4930578N18Rik in Genome Data Viewer
    Location:
    16; 16 C3.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (75919501..75952974)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (76122613..76156086)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene SAM domain, SH3 domain and nuclear localization signals, 1 Neighboring gene STARR-positive B cell enhancer ABC_E8643 Neighboring gene STARR-positive B cell enhancer ABC_E9430 Neighboring gene STARR-positive B cell enhancer mm9_chr16:75908045-75908345 Neighboring gene STARR-positive B cell enhancer mm9_chr16:75909418-75909719 Neighboring gene STARR-positive B cell enhancer mm9_chr16:75929785-75930086 Neighboring gene STARR-seq mESC enhancer starr_41270 Neighboring gene STARR-seq mESC enhancer starr_41271 Neighboring gene STARR-seq mESC enhancer starr_41272 Neighboring gene predicted gene 15555 Neighboring gene STARR-positive B cell enhancer ABC_E8645 Neighboring gene STARR-seq mESC enhancer starr_41274 Neighboring gene STARR-seq mESC enhancer starr_41275 Neighboring gene predicted gene, 22268 Neighboring gene predicted gene, 53928 Neighboring gene predicted gene, 30507 Neighboring gene STARR-seq mESC enhancer starr_41276 Neighboring gene STARR-seq mESC enhancer starr_41277 Neighboring gene predicted gene, 30569 Neighboring gene nuclear receptor interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040575.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK019818
      Related
      ENSMUST00000232455.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      75919501..75952974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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