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    F15G9.1 Suppressor protein SRP40 [ Caenorhabditis elegans ]

    Gene ID: 181184, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F15G9.1
    Official Full Name
    Suppressor protein SRP40
    Primary source
    WormBase:WBGene00008865
    Locus tag
    CELE_F15G9.1
    See related
    AllianceGenome:WB:WBGene00008865
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in striated muscle dense body and striated muscle thin filament. Is expressed in hypodermis and muscle cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F15G9.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Sequence:
    Chromosome: X; NC_003284.9 (9706998..9708563)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein dyf-7 Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene LITAF domain-containing protein Neighboring gene EGF-like domain-containing protein;Ig-like domain-containing protein Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in striated muscle dense body HDA PubMed 
    located_in striated muscle thin filament HDA PubMed 

    General protein information

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    Preferred Names
    Suppressor protein SRP40
    NP_001370065.1
    • Confirmed by transcript evidence
    NP_509631.1
    • Confirmed by transcript evidence
    NP_872240.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      9706998..9708563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077230.9 → NP_509631.1  Suppressor protein SRP40 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509631.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q10033, Q9U3J1

    2. NM_182440.4 → NP_872240.1  Suppressor protein SRP40 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_872240.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8I4L0

    3. NM_001383628.2 → NP_001370065.1  Suppressor protein SRP40 [Caenorhabditis elegans]

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10033.1

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