U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:ch73-380l3.2 si:ch73-380l3.2 [ Danio rerio (zebrafish) ]

    Gene ID: 100003913, updated on 4-Jan-2025

    Summary

    Official Symbol
    si:ch73-380l3.2provided by ZNC
    Official Full Name
    si:ch73-380l3.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080303-1
    See related
    Ensembl:ENSDARG00000075697 AllianceGenome:ZFIN:ZDB-GENE-080303-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    sc:d136
    Summary
    Orthologous to several human genes including CD33 (CD33 molecule); SIGLEC14 (sialic acid binding Ig like lectin 14); and SIGLEC5 (sialic acid binding Ig like lectin 5). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See si:ch73-380l3.2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (38015035..38022400)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (38113130..38120263)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101883854 Neighboring gene uncharacterized LOC108179343 Neighboring gene si:ch73-380l3.3 Neighboring gene uncharacterized LOC137487781

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC100003913

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361237.1NP_001348166.1  uncharacterized protein LOC100003913 precursor

      Status: VALIDATED

      Source sequence(s)
      CR944667, CU466279, EH550738, EH571870
      UniProtKB/TrEMBL
      A0A8M9NYR4
      Related
      ENSDARP00000098732.2, ENSDART00000114188.5
      Conserved Domains (1) summary
      cl11960
      Location:24141
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      38015035..38022400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001098263.1: Suppressed sequence

      Description
      NM_001098263.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.