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    si:ch73-237c6.1 si:ch73-237c6.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100149189, updated on 4-Jan-2025

    Summary

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    Official Symbol
    si:ch73-237c6.1provided by ZNC
    Official Full Name
    si:ch73-237c6.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081105-55
    See related
    Ensembl:ENSDARG00000078114 AllianceGenome:ZFIN:ZDB-GENE-081105-55
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj21f04; wu:fj21f04
    Summary
    Human ortholog(s) of this gene implicated in X-linked properdin deficiency. Orthologous to human CFP (complement factor properdin). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See si:ch73-237c6.1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (23689992..23702297, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (23668753..23681078, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene complement factor properdin Neighboring gene peroxisome proliferator-activated receptor delta b Neighboring gene makorin, ring finger protein, 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100149189
    Names
    complement factor properdin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113579.1 → NP_001107051.1  uncharacterized protein LOC100149189 precursor

      See identical proteins and their annotated locations for NP_001107051.1

      Status: PREDICTED

      Source sequence(s)
      BX469917, CU302443
      UniProtKB/TrEMBL
      A0A8M1NF67, A9C4A2
      Conserved Domains (3) summary
      smart00209
      Location:127 → 179
      TSP1; Thrombospondin type 1 repeats
      pfam00090
      Location:72 → 120
      TSP_1; Thrombospondin type 1 domain
      cl15278
      Location:362 → 437
      TSP_1; Thrombospondin type 1 domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      23689992..23702297 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005166985.5 → XP_005167042.1  uncharacterized protein LOC100149189 isoform X1

      See identical proteins and their annotated locations for XP_005167042.1

      UniProtKB/TrEMBL
      A0A8M1NF67, A9C4A2
      Related
      ENSDARP00000119415.2, ENSDART00000139897.3
      Conserved Domains (3) summary
      smart00209
      Location:127 → 179
      TSP1; Thrombospondin type 1 repeats
      pfam00090
      Location:72 → 120
      TSP_1; Thrombospondin type 1 domain
      cl15278
      Location:362 → 437
      TSP_1; Thrombospondin type 1 domain

    2. XM_005166984.5 → XP_005167041.1  uncharacterized protein LOC100149189 isoform X1

      See identical proteins and their annotated locations for XP_005167041.1

      UniProtKB/TrEMBL
      A0A8M1NF67, A9C4A2
      Conserved Domains (3) summary
      smart00209
      Location:127 → 179
      TSP1; Thrombospondin type 1 repeats
      pfam00090
      Location:72 → 120
      TSP_1; Thrombospondin type 1 domain
      cl15278
      Location:362 → 437
      TSP_1; Thrombospondin type 1 domain
    Nucleotide Protein
    Heading Accession and Version

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