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    Ccdc30 coiled-coil domain containing 30 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362580, updated on 9-Dec-2024

    Summary

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    Symbol
    Ccdc30provided by RGD
    Full Name
    coiled-coil domain containing 30provided by RGD
    Primary source
    RGD:1305604
    See related
    EnsemblRapid:ENSRNOG00000008560 AllianceGenome:RGD:1305604
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305604; RGD1565923
    Summary
    Orthologous to human CCDC30 (coiled-coil domain containing 30). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 145.4), Brain (RPKM 104.8) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc30 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (138212067..138305465, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (132926767..133019635, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (138364211..138462922, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene Y box binding protein 1 Neighboring gene uncharacterized LOC134486981 Neighboring gene uncharacterized LOC134486982 Neighboring gene peptidylprolyl isomerase H Neighboring gene uncharacterized LOC134486980 Neighboring gene transfer RNA alanine (anticodon AGC) 98 Neighboring gene zinc finger, MYND-type containing 12 Neighboring gene phosphopantothenoylcysteine synthetase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain containing 30; coiled-coil domain-containing protein 30
    Names
    coiled-coil domain-containing protein 30-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431184.1 → NP_001418113.1  coiled-coil domain containing 30 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I6AKX9

    2. NM_001431185.1 → NP_001418114.1  coiled-coil domain containing 30 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I6AKX9

    3. NM_001431186.1 → NP_001418115.1  coiled-coil domain containing 30 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      D4A7I7

    4. NM_001431187.1 → NP_001418116.1  coiled-coil domain containing 30 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      D4A7I7

    5. NM_001431188.1 → NP_001418117.1  coiled-coil domain containing 30 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      D4A7I7

    6. NM_001431189.1 → NP_001418118.1  coiled-coil domain containing 30 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    7. NM_001431190.1 → NP_001418119.1  coiled-coil domain containing 30 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    8. NM_001431191.1 → NP_001418120.1  coiled-coil domain containing 30 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    9. NM_001431192.1 → NP_001418121.1  coiled-coil domain containing 30 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    10. NM_001431193.1 → NP_001418122.1  coiled-coil domain containing 30 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    11. NM_001431194.1 → NP_001418123.1  coiled-coil domain containing 30 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    12. NM_001431195.1 → NP_001418124.1  coiled-coil domain containing 30 isoform g

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    13. NM_001431196.1 → NP_001418125.1  coiled-coil domain containing 30 isoform h

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    14. NM_001431197.1 → NP_001418126.1  coiled-coil domain containing 30 isoform i

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    15. NM_001431198.1 → NP_001418127.1  coiled-coil domain containing 30 isoform j

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I6AIV2

    16. NM_001431199.1 → NP_001418128.1  coiled-coil domain containing 30 isoform j

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I6AIV2

    17. NM_001431200.1 → NP_001418129.1  coiled-coil domain containing 30 isoform k

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I6AIV2

    18. NM_001431201.1 → NP_001418130.1  coiled-coil domain containing 30 isoform l

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    19. NM_001431202.1 → NP_001418131.1  coiled-coil domain containing 30 isoform m

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    20. NM_001431203.1 → NP_001418132.1  coiled-coil domain containing 30 isoform m

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    21. NM_001431204.1 → NP_001418133.1  coiled-coil domain containing 30 isoform m

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    22. NM_001431205.1 → NP_001418134.1  coiled-coil domain containing 30 isoform n

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      138212067..138305465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111208.2 → XP_038967136.1  coiled-coil domain-containing protein 30 isoform X4

      Conserved Domains (1) summary
      pfam15742
      Location:171 → 548
      DUF4686; Domain of unknown function (DUF4686)

    2. XM_039111213.2 → XP_038967141.1  coiled-coil domain-containing protein 30 isoform X8

      Related
      ENSRNOP00000107252.1, ENSRNOT00000173376.1
      Conserved Domains (1) summary
      pfam15742
      Location:147 → 524
      DUF4686; Domain of unknown function (DUF4686)

    3. XM_063288612.1 → XP_063144682.1  coiled-coil domain-containing protein 30 isoform X12

    4. XM_008764108.4 → XP_008762330.2  coiled-coil domain-containing protein 30 isoform X4

      Related
      ENSRNOP00000102828.1, ENSRNOT00000163011.1
      Conserved Domains (1) summary
      pfam15742
      Location:171 → 548
      DUF4686; Domain of unknown function (DUF4686)

    5. XM_063288613.1 → XP_063144683.1  coiled-coil domain-containing protein 30 isoform X12

    6. XM_039111207.2 → XP_038967135.1  coiled-coil domain-containing protein 30 isoform X4

      Related
      ENSRNOP00000011325.8, ENSRNOT00000011325.9
      Conserved Domains (1) summary
      pfam15742
      Location:171 → 548
      DUF4686; Domain of unknown function (DUF4686)

    7. XM_063288609.1 → XP_063144679.1  coiled-coil domain-containing protein 30 isoform X8

    8. XM_063288606.1 → XP_063144676.1  coiled-coil domain-containing protein 30 isoform X4

      UniProtKB/TrEMBL
      D4A7I7

    9. XM_039111210.2 → XP_038967138.1  coiled-coil domain-containing protein 30 isoform X4

      UniProtKB/TrEMBL
      D4A7I7
      Conserved Domains (1) summary
      pfam15742
      Location:171 → 548
      DUF4686; Domain of unknown function (DUF4686)

    10. XM_063288607.1 → XP_063144677.1  coiled-coil domain-containing protein 30 isoform X4

      UniProtKB/TrEMBL
      D4A7I7

    11. XM_063288617.1 → XP_063144687.1  coiled-coil domain-containing protein 30 isoform X16

    12. XM_039111219.2 → XP_038967147.1  coiled-coil domain-containing protein 30 isoform X16

      Conserved Domains (1) summary
      pfam15742
      Location:1 → 302
      DUF4686; Domain of unknown function (DUF4686)

    13. XM_039111206.2 → XP_038967134.1  coiled-coil domain-containing protein 30 isoform X2

      Conserved Domains (1) summary
      pfam15742
      Location:210 → 587
      DUF4686; Domain of unknown function (DUF4686)

    14. XM_063288611.1 → XP_063144681.1  coiled-coil domain-containing protein 30 isoform X11

    15. XM_039111205.2 → XP_038967133.1  coiled-coil domain-containing protein 30 isoform X1

      Conserved Domains (1) summary
      pfam15742
      Location:227 → 604
      DUF4686; Domain of unknown function (DUF4686)

    16. XM_039111216.2 → XP_038967144.1  coiled-coil domain-containing protein 30 isoform X11

      Conserved Domains (1) summary
      pfam15742
      Location:103 → 480
      DUF4686; Domain of unknown function (DUF4686)

    17. XM_039111215.2 → XP_038967143.1  coiled-coil domain-containing protein 30 isoform X10

      Conserved Domains (1) summary
      pfam15742
      Location:227 → 518
      DUF4686; Domain of unknown function (DUF4686)

    18. XM_039111203.2 → XP_038967131.1  coiled-coil domain-containing protein 30 isoform X1

      Related
      ENSRNOP00000093900.1, ENSRNOT00000116887.2
      Conserved Domains (1) summary
      pfam15742
      Location:227 → 604
      DUF4686; Domain of unknown function (DUF4686)

    19. XM_063288605.1 → XP_063144675.1  coiled-coil domain-containing protein 30 isoform X3

    20. XM_063288615.1 → XP_063144685.1  coiled-coil domain-containing protein 30 isoform X13

    21. XM_063288616.1 → XP_063144686.1  coiled-coil domain-containing protein 30 isoform X14

    22. XM_063288614.1 → XP_063144684.1  coiled-coil domain-containing protein 30 isoform X13

    23. XM_039111212.2 → XP_038967140.1  coiled-coil domain-containing protein 30 isoform X6

      Conserved Domains (1) summary
      pfam15742
      Location:227 → 604
      DUF4686; Domain of unknown function (DUF4686)

    24. XM_039111211.2 → XP_038967139.1  coiled-coil domain-containing protein 30 isoform X5

      Conserved Domains (1) summary
      pfam15742
      Location:227 → 604
      DUF4686; Domain of unknown function (DUF4686)

    25. XM_063288608.1 → XP_063144678.1  coiled-coil domain-containing protein 30 isoform X7

    26. XM_063288610.1 → XP_063144680.1  coiled-coil domain-containing protein 30 isoform X9

    27. XM_039111218.2 → XP_038967146.1  coiled-coil domain-containing protein 30 isoform X15

      UniProtKB/TrEMBL
      A6JZN6
      Conserved Domains (1) summary
      pfam15742
      Location:227 → 406
      DUF4686; Domain of unknown function (DUF4686)

    RNA

    1. XR_005504969.2 RNA Sequence

    2. XR_010066618.1 RNA Sequence

    3. XR_010066620.1 RNA Sequence

    4. XR_010066619.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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