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    ttr-8 Transthyretin-like family protein [ Caenorhabditis elegans ]

    Gene ID: 187856, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ttr-8
    Official Full Name
    Transthyretin-like family protein
    Primary source
    WormBase:WBGene00020049
    Locus tag
    CELE_R13A5.6
    See related
    AllianceGenome:WB:WBGene00020049
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cell surface and extracellular region. Is expressed in hypodermis and nervous system. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See ttr-8 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    2
    Sequence:
    Chromosome: III; NC_003281.10 (7564500..7565347, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Homeobox protein ceh-13 Neighboring gene Ligand-Gated ion Channel Neighboring gene Transthyretin-like family protein Neighboring gene FBA_2 domain-containing protein Neighboring gene Large ribosomal subunit protein uL6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of protein domain families in Caenorhabditis elegans. Sonnhammer EL, et al. Genomics, 1997 Dec 1. PMID 9417907
    2. Detection of broadly expressed neuronal genes in C. elegans. Ruvinsky I, et al. Dev Biol, 2007 Feb 15. PMID 17046742
    3. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transthyretin-like family protein
    NP_498657.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      7564500..7565347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066256.2 → NP_498657.1  Transthyretin-like family protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498657.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95Y93
      Conserved Domains (1) summary
      pfam01060
      Location:26 → 104
      TTR-52; Transthyretin-like family
    Nucleotide Protein
    Heading Accession and Version

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