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    Y50D4B.2 Saccharopine dehydrogenase-like C-terminal domain-containing protein;Sacchrp_dh_NADP domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 190094, updated on 4-Jan-2025

    Summary

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    Official Symbol
    Y50D4B.2
    Official Full Name
    Saccharopine dehydrogenase-like C-terminal domain-containing protein;Sacchrp_dh_NADP domain-containing protein
    Primary source
    WormBase:WBGene00021741
    Locus tag
    CELE_Y50D4B.2
    See related
    AllianceGenome:WB:WBGene00021741
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in glycolipid biosynthetic process. Predicted to be active in lipid droplet. Orthologous to human SCCPDH (saccharopine dehydrogenase (putative)). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See Y50D4B.2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (1100580..1104131)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene C-type lectin domain-containing protein Neighboring gene PAW domain-containing protein Neighboring gene Expressed conserved protein;PB1 domain-containing protein Neighboring gene ncRNA Neighboring gene Peptidase C1A papain C-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in glycolipid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in lipid droplet IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Saccharopine dehydrogenase-like C-terminal domain-containing protein;Sacchrp_dh_NADP domain-containing protein
    NP_001300266.1
    • Confirmed by transcript evidence
    NP_503379.3
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      1100580..1104131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070978.4 → NP_503379.3  Saccharopine dehydrogenase-like C-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_503379.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N4S9
      Conserved Domains (1) summary
      COG3268
      Location:73 → 195
      COG3268; Uncharacterized conserved protein, related to short-chain dehydrogenases [Function unknown]

    2. NM_001313337.3 → NP_001300266.1  Sacchrp_dh_NADP domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AVC7
      Conserved Domains (1) summary
      cl21454
      Location:7 → 61
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RNA

    1. NR_132497.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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