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    LOC101928977 uncharacterized LOC101928977 [ Homo sapiens (human) ]

    Gene ID: 101928977, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC101928977
    Gene description
    uncharacterized LOC101928977
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC101928977 in Genome Data Viewer
    Location:
    1p13.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (115922573..115977276, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (115930532..115985267, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (116465194..116519897, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 43 Neighboring gene NANOG hESC enhancer GRCh37_chr1:116422522-116423061 Neighboring gene serine palmitoyltransferase small subunit A-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:116470749-116471250 Neighboring gene long intergenic non-protein coding RNA 1649 Neighboring gene NANOG hESC enhancer GRCh37_chr1:116483799-116484300 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1225 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:116531140-116531301 Neighboring gene solute carrier family 22 member 15 Neighboring gene NANOG hESC enhancer GRCh37_chr1:116590670-116591171 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:116609321-116610520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1556 Neighboring gene uncharacterized LOC105378918 Neighboring gene mab-21 like 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1557 Neighboring gene Sharpr-MPRA regulatory region 11424 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1227 Neighboring gene uncharacterized LOC124904384 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1558

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125970.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      DA284216, DA297063

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      115922573..115977276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      115930532..115985267 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)