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    F53C11.5 USP domain-containing protein;Zf-C3H1 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179874, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F53C11.5
    Official Full Name
    USP domain-containing protein;Zf-C3H1 domain-containing protein
    Primary source
    WormBase:WBGene00009975
    Locus tag
    CELE_F53C11.5
    See related
    AllianceGenome:WB:WBGene00009975
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in body wall musculature; nervous system; and pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F53C11.5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    14
    Sequence:
    Chromosome: V; NC_003283.11 (13787549..13796254)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene putative oxidoreductase F53C11.3 Neighboring gene SH2 domain-containing protein Neighboring gene Fibronectin type-III domain-containing protein Neighboring gene WD_REPEATS_REGION domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    USP domain-containing protein;Zf-C3H1 domain-containing protein
    NP_001041120.1
    • Confirmed by transcript evidence
    NP_001041121.1
    • Partially confirmed by transcript evidence
    NP_001041122.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13787549..13796254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047655.3 → NP_001041120.1  USP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041120.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1HAZ9

    2. NM_001047656.5 → NP_001041121.1  Zf-C3H1 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041121.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93763

    3. NM_001047657.4 → NP_001041122.1  Zf-C3H1 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041122.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1HAZ8
    Nucleotide Protein
    Heading Accession and Version

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